Download MendeleyLigand recognition by the energy sensor domain of the CcpN repressor
Chaix, D., de Guillen, K., Coq, D.L., Hoh, F., Roumestand, C., Aymerich, S., Arold, S.T., Declerck, N.To be published.
3FWS
Crystal Structure of the CBS domains from the Bacillus subtilis CcpN repressor complexed with AppNp, phosphate and magnesium ions
- PDB DOI: https://doi.org/10.2210/pdb3FWS/pdb
- Classification: TRANSCRIPTION
- Organism(s): Bacillus subtilis
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-01-19 Released: 2010-01-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.262
- R-Value Work: 0.189
- R-Value Observed: 0.192
Starting Model: experimental
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This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| YqzB protein | 159 | Bacillus subtilis | Mutation(s): 0 Gene Names: yqzB |  | |
UniProt | |||||
Find proteins for O34994 (Bacillus subtilis (strain 168)) Explore O34994 Go to UniProtKB: O34994 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | O34994 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ANP Query on ANP | C [auth A], G [auth B] | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N |  | ||
| PO4 Query on PO4 | D [auth A], H [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| MG Query on MG | E [auth A], F [auth A], I [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.03 Å
- R-Value Free: 0.262
- R-Value Work: 0.189
- R-Value Observed: 0.192
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 54.025 | α = 90 |
| b = 103.969 | β = 90 |
| c = 98.387 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SOLVE | phasing |
| REFMAC | refinement |
| MOSFLM | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2010-01-26 Deposition Author(s): Chaix, D., Arold, S., Hoh, F., Declerck, N.
Revision History (Full details and data files)
- Version 1.0: 2010-01-26
Type: Initial release - Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
