3FVW | pdb_00003fvw

Crystal structure of the Q8DWD8_STRMU protein from Streptococcus mutans. Northeast Structural Genomics Consortium target SmR99.

PDB DOI: https://doi.org/10.2210/pdb3FVW/pdb

Classification: structural genomics, unknown function
Organism(s): Streptococcus mutans
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2009-01-16 Released: 2009-02-10
Deposition Author(s): Vorobiev, S.M., Abashidze, M., Belote, R.L., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Acton, T., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.217 (Depositor), 0.205 (DCC)
R-Value Work:
0.188 (Depositor), 0.184 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 3FVW

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the Q8DWD8_STRMU protein from Streptococcus mutans.

Vorobiev, S.M., Abashidze, M., Belote, R.L., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Acton, T., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 43.02 kDa
Atom Count: 2,899
Modeled Residue Count: 361
Deposited Residue Count: 384
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative NAD(P)H-dependent FMN reductase	A, B	192	Streptococcus mutans	Mutation(s): 1 Gene Names: SMU_125
UniProt
Find proteins for Q8DWD8 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore Q8DWD8 Go to UniProtKB: Q8DWD8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8DWD8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.217 (Depositor), 0.205 (DCC)
R-Value Work: 0.188 (Depositor), 0.184 (DCC)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 99.297	α = 90
b = 99.297	β = 90
c = 90.114	γ = 120

Software Package:

Software Name	Purpose
Blu-Ice	data collection
Web-Ice	data collection
SHELX	model building
RESOLVE	model building
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing
RESOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-02-10

Deposition Author(s):

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2009-02-10
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2017-10-25
Changes: Author supporting evidence, Refinement description
Version 1.3: 2021-10-20
Changes: Database references, Derived calculations
Version 1.4: 2024-11-20
Changes: Data collection, Structure summary

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

CoreTrustSeal

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.