3FH6 | pdb_00003fh6

Crystal structure of the resting state maltose transporter from E. coli


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.50 Å
  • R-Value Free: 
    0.363 (Depositor), 0.369 (DCC) 
  • R-Value Work: 
    0.340 (Depositor), 0.354 (DCC) 

Starting Models: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Alternating access in maltose transporter mediated by rigid-body rotations.

Khare, D.Oldham, M.L.Orelle, C.Davidson, A.L.Chen, J.

(2009) Mol Cell 33: 528-536

  • DOI: https://doi.org/10.1016/j.molcel.2009.01.035
  • Primary Citation Related Structures: 
    3FH6

  • PubMed Abstract: 

    ATP-binding cassette transporters couple ATP hydrolysis to substrate translocation through an alternating access mechanism, but the nature of the conformational changes in a transport cycle remains elusive. Previously we reported the structure of the maltose transporter MalFGK(2) in an outward-facing conformation in which the transmembrane (TM) helices outline a substrate-binding pocket open toward the periplasmic surface and ATP is poised for hydrolysis along the closed nucleotide-binding dimer interface. Here we report the structure of the nucleotide-free maltose transporter in which the substrate binding pocket is only accessible from the cytoplasm and the nucleotide-binding interface is open. Comparison of the same transporter crystallized in two different conformations reveals that alternating access involves rigid-body rotations of the TM subdomains that are coupled to the closure and opening of the nucleotide-binding domain interface. The comparison also reveals that point mutations enabling binding protein-independent transport line dynamic interfaces in the TM region.


  • Organizational Affiliation
    • Department of Biological Sciences, Purdue University, West Lafayette, IN 47907, USA.

Macromolecule Content 

  • Total Structure Weight: 339.42 kDa 
  • Atom Count: 20,236 
  • Modeled Residue Count: 2,626 
  • Deposited Residue Count: 3,076 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Maltose transport system permease protein malFA [auth F],
E [auth H]
480Escherichia coli K-12Mutation(s): 0 
Gene Names: b4033JW3993malF
Membrane Entity: Yes 
UniProt
Find proteins for P02916 (Escherichia coli (strain K12))
Explore P02916 
Go to UniProtKB:  P02916
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UniProt GroupP02916
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Maltose transport system permease protein malGB [auth G],
F [auth I]
296Escherichia coli K-12Mutation(s): 0 
Gene Names: b4032JW3992malG
Membrane Entity: Yes 
UniProt
Find proteins for P68183 (Escherichia coli (strain K12))
Explore P68183 
Go to UniProtKB:  P68183
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68183
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Maltose/maltodextrin import ATP-binding protein malKC [auth A],
D [auth B],
G [auth C],
H [auth D]
381Escherichia coli K-12Mutation(s): 0 
Gene Names: b4035JW3995malK
EC: 3.6.3.19 (PDB Primary Data), 7.5.2.1 (UniProt)
Membrane Entity: Yes 
UniProt
Find proteins for P68187 (Escherichia coli (strain K12))
Explore P68187 
Go to UniProtKB:  P68187
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP68187
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.50 Å
  • R-Value Free:  0.363 (Depositor), 0.369 (DCC) 
  • R-Value Work:  0.340 (Depositor), 0.354 (DCC) 
Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 171.097α = 90
b = 209.48β = 90
c = 438.741γ = 90
Software Package:
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing
DMphasing
CNSrefinement
PDB_EXTRACTdata extraction
MAR345data collection
HKL-2000data reduction

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Source and taxonomy, Version format compliance
  • Version 1.2: 2017-11-01
    Changes: Refinement description
  • Version 1.3: 2023-09-06
    Changes: Data collection, Database references, Refinement description