3FAU | pdb_00003fau

Crystal Structure of human small-MutS related domain

• PDB DOI: https://doi.org/10.2210/pdb3FAU/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-11-18 Released: 2009-12-15 
• Deposition Author(s): Kim, T.G., Kwon, T.H., Ryu, E.K., Min, K., Heo, S.-D., Song, K.M., Jun, W.J., Jung, E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.242 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.187 (Depositor), 0.184 (DCC) 
• R-Value Observed: 
  0.190 (Depositor) 

Starting Model: experimental

Literature

Strcutral Dynamincs of the Endonuclease Small-MutS Related Domains of BCL3 binding protein

Kim, T.G., Kwon, T.H., Ban, C., Ku, J.K.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 36.63 kDa 
• Atom Count: 2,736 
• Modeled Residue Count: 308 
• Deposited Residue Count: 328 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NEDD4-binding protein 2	A, B, C, D	82	Homo sapiens	Mutation(s): 0  Gene Names: B3BP, KIAA1413, N4BP2 EC: 3
UniProt & NIH Common Fund Data Resources
Find proteins for Q86UW6 (Homo sapiens) Explore Q86UW6  Go to UniProtKB:  Q86UW6
PHAROS:  Q86UW6 GTEx:  ENSG00000078177

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.242 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.187 (Depositor), 0.184 (DCC) 
• R-Value Observed: 0.190 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.49	α = 90
b = 57.106	β = 97.91
c = 71.356	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
ADSC	data collection
HKL-2000	data reduction
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-12-15 
Deposition Author(s): Kim, T.G., Kwon, T.H., Ryu, E.K., Min, K., Heo, S.-D., Song, K.M., Jun, W.J., Jung, E.

Revision History  

• Version 1.0: 2009-12-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-11-01
  Changes: Refinement description
• Version 1.3: 2023-11-01
  Changes: Data collection, Database references, Refinement description