3EW7 | pdb_00003ew7

Crystal structure of the Lmo0794 protein from Listeria monocytogenes. Northeast Structural Genomics Consortium target LmR162.

PDB DOI: https://doi.org/10.2210/pdb3EW7/pdb

Classification: structural genomics, unknown function
Organism(s): Listeria monocytogenes
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2008-10-14 Released: 2008-11-11
Deposition Author(s): Vorobiev, S.M., Abashidze, M., Seetharaman, J., Wang, D., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.73 Å
R-Value Free:
0.247 (Depositor), 0.258 (DCC)
R-Value Work:
0.224 (Depositor), 0.236 (DCC)
R-Value Observed:
0.224 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 3EW7

This is version 1.4 of the entry. See complete history.

Literature

Crystal structure of the Lmo0794 protein from Listeria monocytogenes.

Vorobiev, S.M., Abashidze, M., Seetharaman, J., Wang, D., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 24.56 kDa
Atom Count: 1,382
Modeled Residue Count: 172
Deposited Residue Count: 221
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lmo0794 protein	A	221	Listeria monocytogenes	Mutation(s): 3 Gene Names: lmo0794
UniProt
Find proteins for Q8Y8U8 (Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)) Explore Q8Y8U8 Go to UniProtKB: Q8Y8U8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8Y8U8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.73 Å
R-Value Free: 0.247 (Depositor), 0.258 (DCC)
R-Value Work: 0.224 (Depositor), 0.236 (DCC)
R-Value Observed: 0.224 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 83.768	α = 90
b = 83.768	β = 90
c = 92.215	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-11-11

Deposition Author(s):

Seetharaman, J.

Montelione, G.T.

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2008-11-11
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2021-10-20
Changes: Database references, Derived calculations
Version 1.3: 2023-12-27
Changes: Data collection
Version 1.4: 2024-11-13
Changes: Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.