3EVI

Crystal structure of the thioredoxin-fold domain of human phosducin-like protein 2


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of the thioredoxin-fold domain of human phosducin-like protein 2

Lou, X.Bao, R.Zhou, C.Z.Chen, Y.

(2009) Acta Crystallogr Sect F Struct Biol Cryst Commun 65: 67-70

  • DOI: https://doi.org/10.1107/S1744309108037342
  • Primary Citation of Related Structures:  
    3EVI

  • PubMed Abstract: 

    Human phosducin-like protein 2 (hPDCL2) has been identified as belonging to subgroup II of the phosducin (Pdc) family. The members of this family share an N-terminal helix domain and a C-terminal thioredoxin-fold (Trx-fold) domain. The X-ray crystal structure of the Trx-fold domain of hPDCL2 was solved at 2.70 A resolution and resembled the Trx-fold domain of rat phosducin. Comparative structural analysis revealed the structural basis of their putative functional divergence.


  • Organizational Affiliation

    Institute of Protein Research, Tongji University, Shanghai 200092, People's Republic of China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Phosducin-like protein 2
A, B
118Homo sapiensMutation(s): 0 
Gene Names: PDCL2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N4E4 (Homo sapiens)
Explore Q8N4E4 
Go to UniProtKB:  Q8N4E4
GTEx:  ENSG00000163440 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8N4E4
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.276 
  • R-Value Work: 0.234 
  • R-Value Observed: 0.236 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.594α = 90
b = 44.594β = 90
c = 141.971γ = 120
Software Package:
Software NamePurpose
MAR345dtbdata collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2009-03-03
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Version format compliance
  • Version 1.2: 2023-11-01
    Changes: Data collection, Database references, Derived calculations, Refinement description