3EU9 | pdb_00003eu9

The ankyrin repeat domain of Huntingtin interacting protein 14

PDB DOI: https://doi.org/10.2210/pdb3EU9/pdb

Classification: protein binding, methyl-lysine-binding protein
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2008-10-09 Released: 2009-06-23
Deposition Author(s): Gao, T., Collins, R.E., Horton, J.R., Zhang, R., Zhang, X., Cheng, X.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free:
0.251 (Depositor), 0.243 (DCC)
R-Value Work:
0.222 (Depositor), 0.215 (DCC)
R-Value Observed:
0.222 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.2 of the entry. See complete history.

Literature

The ankyrin repeat domain of Huntingtin interacting protein 14 contains a surface aromatic cage, a potential site for methyl-lysine binding.

Gao, T., Collins, R.E., Horton, J.R., Zhang, X., Zhang, R., Dhayalan, A., Tamas, R., Jeltsch, A., Cheng, X.

(2009) Proteins 76: 772-777

PubMed: 19434754 Search on PubMed Search on PubMed Central
DOI: https://doi.org/10.1002/prot.22452
Primary Citation Related Structures:
3EU9

Organizational Affiliation

Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA.

Macromolecule Content

Total Structure Weight: 81.62 kDa
Atom Count: 5,620
Modeled Residue Count: 685
Deposited Residue Count: 720
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Huntingtin-interacting protein 14	A, B, C	240	Homo sapiens	Mutation(s): 0 Gene Names: ZDHHC17, HIP14, HIP3, HYPH, KIAA0946, HSPC294 EC: 2.3.1 (PDB Primary Data), 2.3.1.225 (UniProt)
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IUH5 (Homo sapiens) Explore Q8IUH5 Go to UniProtKB: Q8IUH5
PHAROS: Q8IUH5 GTEx: ENSG00000186908
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8IUH5
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
HIS Query on HIS Download:Ideal Coordinates CCD File SDF format, chain D [auth A] MOL2 format, chain D [auth A] mmCIF format, chain D [auth A]	D [auth A]	HISTIDINE C₆ H₁₀ N₃ O₂ HNDVDQJCIGZPNO-YFKPBYRVSA-O		Interactions Focus chain D [auth A] Interactions & Density Focus chain D [auth A]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain F [auth A] SDF format, chain G [auth A] SDF format, chain H [auth B] SDF format, chain I [auth B] SDF format, chain L [auth C] SDF format, chain M [auth C] MOL2 format, chain E [auth A] MOL2 format, chain F [auth A] MOL2 format, chain G [auth A] MOL2 format, chain H [auth B] MOL2 format, chain I [auth B] MOL2 format, chain L [auth C] MOL2 format, chain M [auth C] mmCIF format, chain E [auth A] mmCIF format, chain F [auth A] mmCIF format, chain G [auth A] mmCIF format, chain H [auth B] mmCIF format, chain I [auth B] mmCIF format, chain L [auth C] mmCIF format, chain M [auth C]	E [auth A] F [auth A] G [auth A] H [auth B] I [auth B] E [auth A], F [auth A], G [auth A], H [auth B], I [auth B], L [auth C], M [auth C]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain L [auth C] Focus chain M [auth C] Interactions & Density Focus chain E [auth A] Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth B] Focus chain I [auth B] Focus chain L [auth C] Focus chain M [auth C]
GOL Query on GOL Download:Ideal Coordinates CCD File SDF format, chain J [auth C] SDF format, chain K [auth C] MOL2 format, chain J [auth C] MOL2 format, chain K [auth C] mmCIF format, chain J [auth C] mmCIF format, chain K [auth C]	J [auth C], K [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain J [auth C] Focus chain K [auth C] Interactions & Density Focus chain J [auth C] Focus chain K [auth C]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.99 Å
R-Value Free: 0.251 (Depositor), 0.243 (DCC)
R-Value Work: 0.222 (Depositor), 0.215 (DCC)
R-Value Observed: 0.222 (Depositor)

Space Group: P 6₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.66	α = 90
b = 106.66	β = 90
c = 255.53	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

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Ligand Structure Quality Assessment

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Entry History

Deposition Data

Released Date: 2009-06-23

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2009-06-23
Type: Initial release
Version 1.1: 2011-07-13
Changes: Non-polymer description, Version format compliance
Version 1.2: 2023-12-27
Changes: Data collection, Database references, Derived calculations

3EU9 | pdb_00003eu9

The ankyrin repeat domain of Huntingtin interacting protein 14

Literature

The ankyrin repeat domain of Huntingtin interacting protein 14 contains a surface aromatic cage, a potential site for methyl-lysine binding.

Biological Assembly 1

Biological Assembly 2

Macromolecules

Entity ID: 1

UniProt & NIH Common Fund Data Resources

Entity Groups

Sequence Annotations

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