3DEV | pdb_00003dev

Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87

• PDB DOI: https://doi.org/10.2210/pdb3DEV/pdb

• Classification: structural genomics, unknown function
• Organism(s): Staphylococcus haemolyticus JCSC1435
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-06-10 Released: 2008-08-05 
• Deposition Author(s): Forouhar, F., Neely, H., Seetharaman, J., Mao, L., Xiao, R., Ciccosanti, C., Foote, E.L., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free: 
  0.245 (Depositor), 0.253 (DCC) 
• R-Value Work: 
  0.193 (Depositor), 0.216 (DCC) 
• R-Value Observed: 
  0.193 (Depositor) 

Literature

Crystal structure of SH1221 protein from Staphylococcus haemolyticus, Northeast Structural Genomics Consortium Target ShR87

Forouhar, F., Neely, H., Seetharaman, J., Mao, L., Xiao, R., Ciccosanti, C., Foote, E.L., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 73.52 kDa 
• Atom Count: 5,089 
• Modeled Residue Count: 632 
• Deposited Residue Count: 640 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SH1221	A, B	320	Staphylococcus haemolyticus JCSC1435	Mutation(s): 0  Gene Names: SH1221
UniProt
Find proteins for Q4L745 (Staphylococcus haemolyticus (strain JCSC1435)) Explore Q4L745  Go to UniProtKB:  Q4L745

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	C [auth A], D [auth A], F [auth B]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L
MG	E [auth A], G [auth B]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.10 Å
• R-Value Free:  0.245 (Depositor), 0.253 (DCC) 
• R-Value Work:  0.193 (Depositor), 0.216 (DCC) 
• R-Value Observed: 0.193 (Depositor) 

Space Group: P 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.087	α = 90
b = 106.087	β = 90
c = 86.092	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-08-05 
Deposition Author(s): Forouhar, F., Neely, H., Seetharaman, J., Mao, L., Xiao, R., Ciccosanti, C., Foote, E.L., Wang, D., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2008-08-05
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Source and taxonomy, Version format compliance
• Version 1.2: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary