3CPK

Crystal structure of the Q7W7N7_BORPA protein from Bordetella parapertussis. Northeast Structural Genomics Consortium target BeR31

• PDB DOI: https://doi.org/10.2210/pdb3CPK/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bordetella parapertussis 12822
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-03-31 Released: 2008-04-15 
• Deposition Author(s): Vorobiev, S.M., Abashidze, M., Seetharaman, J., Zhao, L., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.253 
• R-Value Work: 0.209 
• R-Value Observed: 0.209 

Literature

Crystal structure of the Q7W7N7_BORPA protein from Bordetella parapertussis.

Vorobiev, S.M., Abashidze, M., Seetharaman, J., Zhao, L., Janjua, H., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: assay for oligomerization

Macromolecule Content

• Total Structure Weight: 15.99 kDa 
• Atom Count: 896 
• Modelled Residue Count: 118 
• Deposited Residue Count: 150 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein Q7W7N7_BORPA	A	150	Bordetella parapertussis 12822	Mutation(s): 0  Gene Names: BPP2477
UniProt
Find proteins for Q7W7N7 (Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)) Explore Q7W7N7  Go to UniProtKB:  Q7W7N7

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 0.253 
• R-Value Work: 0.209 
• R-Value Observed: 0.209 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 43.51	α = 90
b = 43.51	β = 90
c = 118.224	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-04-15 
Deposition Author(s): Vorobiev, S.M., Abashidze, M., Seetharaman, J., Zhao, L., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Revision History  

• Version 1.0: 2008-04-15
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-10-25
  Changes: Author supporting evidence
• Version 1.3: 2024-10-30
  Changes: Data collection, Database references, Derived calculations, Structure summary