3C9G | pdb_00003c9g

Crystal structure of uncharacterized UPF0201 protein AF_135

• PDB DOI: https://doi.org/10.2210/pdb3C9G/pdb

• Classification: NUCLEOTIDE BINDING PROTEIN
• Organism(s): Archaeoglobus fulgidus DSM 4304
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2008-02-15 Released: 2008-05-13 
• Deposition Author(s): Sugadev, R., Ozyurt, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.324 (Depositor), 0.338 (DCC) 
• R-Value Work: 
  0.269 (Depositor), 0.280 (DCC) 
• R-Value Observed: 
  0.269 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of uncharacterized UPF0201 protein AF_135.

Sugadev, R., Ozyurt, S., Burley, S.K., Swaminathan, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 32.9 kDa 
• Atom Count: 2,109 
• Modeled Residue Count: 258 
• Deposited Residue Count: 284 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0200/UPF0201 protein AF_1395	A, B	142	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0  Gene Names: AF_1395
UniProt
Find proteins for O28876 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28876  Go to UniProtKB:  O28876

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.324 (Depositor), 0.338 (DCC) 
• R-Value Work:  0.269 (Depositor), 0.280 (DCC) 
• R-Value Observed: 0.269 (Depositor) 

Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.986	α = 90
b = 79.986	β = 90
c = 95.374	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
MAR345	data collection
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-05-13 
Deposition Author(s): Sugadev, R., Ozyurt, S., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2008-05-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Refinement description