3C0F | pdb_00003c0f

Crystal Structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source

PDB DOI: https://doi.org/10.2210/pdb3C0F/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Archaeoglobus fulgidus DSM 4304
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2008-01-20 Released: 2008-02-05
Deposition Author(s): Li, Y., Bahti, P., Shaw, N., Song, G., Yin, J., Zhu, J.-Y., Zhang, H., Xu, H., Wang, B.-C., Liu, Z.-J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free:
0.226 (Depositor)
R-Value Work:
0.206 (Depositor)
R-Value Observed:
0.207 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of a novel non-Pfam protein AF1514 from Archeoglobus fulgidus DSM 4304 solved by S-SAD using a Cr X-ray source.

Li, Y., Bahti, P., Shaw, N., Song, G., Chen, S., Zhang, X., Zhang, M., Cheng, C., Yin, J., Zhu, J.Y., Zhang, H., Che, D., Xu, H., Abbas, A., Wang, B.C., Liu, Z.J.

(2008) Proteins 71: 2109-2113

PubMed: 18361456 Search on PubMed
DOI: https://doi.org/10.1002/prot.22025
Primary Citation Related Structures:
3C0F

Organizational Affiliation

National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China.

Macromolecule Content

Total Structure Weight: 10.65 kDa
Atom Count: 803
Modeled Residue Count: 85
Deposited Residue Count: 91
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein AF_1514	A [auth B]	91	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0 Gene Names: AF1514
UniProt
Find proteins for O28758 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28758 Go to UniProtKB: O28758
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O28758
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY Query on MLY	A [auth B]	L-PEPTIDE LINKING	C₈ H₁₈ N₂ O₂		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.80 Å
R-Value Free: 0.226 (Depositor)
R-Value Work: 0.206 (Depositor)
R-Value Observed: 0.207 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.737	α = 90
b = 49.737	β = 90
c = 106.462	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-02-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2008-02-05
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2025-03-26
Changes: Data collection, Database references, Derived calculations, Structure summary