3BWN

L-tryptophan aminotransferase


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.3 of the entry. See complete history


Literature

Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants

Tao, Y.Ferrer, J.L.Ljung, K.Pojer, F.Hong, F.Long, J.A.Li, L.Moreno, J.E.Bowman, M.E.Ivans, L.J.Cheng, Y.Lim, J.Zhao, Y.Ballare, C.L.Sandberg, G.Noel, J.P.Chory, J.

(2008) Cell 133: 164-176

  • DOI: https://doi.org/10.1016/j.cell.2008.01.049
  • Primary Citation of Related Structures:  
    3BWN

  • PubMed Abstract: 

    Plants grown at high densities perceive a decrease in the red to far-red (R:FR) ratio of incoming light, resulting from absorption of red light by canopy leaves and reflection of far-red light from neighboring plants. These changes in light quality trigger a series of responses known collectively as the shade avoidance syndrome. During shade avoidance, stems elongate at the expense of leaf and storage organ expansion, branching is inhibited, and flowering is accelerated. We identified several loci in Arabidopsis, mutations in which lead to plants defective in multiple shade avoidance responses. Here we describe TAA1, an aminotransferase, and show that TAA1 catalyzes the formation of indole-3-pyruvic acid (IPA) from L-tryptophan (L-Trp), the first step in a previously proposed, but uncharacterized, auxin biosynthetic pathway. This pathway is rapidly deployed to synthesize auxin at the high levels required to initiate the multiple changes in body plan associated with shade avoidance.


  • Organizational Affiliation

    Howard Hughes Medical Institute, The Salk Institute for Biological Studies, La Jolla, CA 92037, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
L-tryptophan aminotransferase
A, B, D, E, F
391Arabidopsis thalianaMutation(s): 0 
Gene Names: At1g70560/F5A18_26F5A18.26
EC: 2.6.1.99 (UniProt), 2.6.1.27 (UniProt)
UniProt
Find proteins for Q9S7N2 (Arabidopsis thaliana)
Explore Q9S7N2 
Go to UniProtKB:  Q9S7N2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9S7N2
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
L-tryptophan aminotransferase391Arabidopsis thalianaMutation(s): 0 
Gene Names: At1g70560/F5A18_26F5A18.26
EC: 2.6.1.99 (UniProt), 2.6.1.27 (UniProt)
UniProt
Find proteins for Q9S7N2 (Arabidopsis thaliana)
Explore Q9S7N2 
Go to UniProtKB:  Q9S7N2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9S7N2
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.253 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 93.41α = 90
b = 97.83β = 104.35
c = 139.46γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
XDSdata reduction
XSCALEdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-29
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-08-30
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.3: 2023-11-15
    Changes: Data collection