3ADO | pdb_00003ado

Crystal Structure of the Rabbit L-Gulonate 3-Dehydrogenase

PDB DOI: https://doi.org/10.2210/pdb3ADO/pdb
Entry: 3ADO supersedes: 2DPO

Classification: OXIDOREDUCTASE
Organism(s): Oryctolagus cuniculus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-01-26 Released: 2010-02-09
Deposition Author(s): Asada, Y., Hara, A., Kunishima, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.206 (Depositor), 0.207 (DCC)
R-Value Work:
0.182 (Depositor), 0.182 (DCC)
R-Value Observed:
0.183 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 3ADO

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the Rabbit L-Gulonate 3-Dehydrogenase

Asada, Y., Hara, A., Kunishima, N.

To be published.

Macromolecule Content

Total Structure Weight: 35.25 kDa
Atom Count: 2,823
Modeled Residue Count: 310
Deposited Residue Count: 319
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Lambda-crystallin	A	319	Oryctolagus cuniculus	Mutation(s): 0 Gene Names: CRYL1, GUL3DH EC: 1.1.1.45
UniProt
Find proteins for P14755 (Oryctolagus cuniculus) Explore P14755 Go to UniProtKB: P14755
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P14755
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.206 (Depositor), 0.207 (DCC)
R-Value Work: 0.182 (Depositor), 0.182 (DCC)
R-Value Observed: 0.183 (Depositor)

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 71.809	α = 90
b = 69.079	β = 102.729
c = 65.642	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
MOLREP	phasing
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2010-02-09

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

This entry supersedes: 2DPO

Revision History (Full details and data files)

Version 1.0: 2010-02-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.