3A2E

Crystal structure of ginkbilobin-2, the novel antifungal protein from Ginkgo biloba seeds

PDB DOI: https://doi.org/10.2210/pdb3A2E/pdb
Entry: 3A2E supersedes: 2E79

Classification: PLANT PROTEIN
Organism(s): Ginkgo biloba
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-05-13 Released: 2009-06-02
Deposition Author(s): Miyakawa, T., Miyazono, K., Sawano, Y., Hatano, K., Tanokura, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.38 Å
R-Value Free: 0.232
R-Value Work: 0.207
R-Value Observed: 0.208

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of ginkbilobin-2 with homology to the extracellular domain of plant cysteine-rich receptor-like kinases

Miyakawa, T., Miyazono, K., Sawano, Y., Hatano, K., Tanokura, M.

(2009) Proteins 77: 247-251

PubMed: 19603485 Search on PubMed
DOI: https://doi.org/10.1002/prot.22494
Primary Citation of Related Structures:
3A2E

Organizational Affiliation

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo 113-8657, Japan.

Macromolecule Content

Total Structure Weight: 46.68 kDa
Atom Count: 3,742
Modelled Residue Count: 432
Deposited Residue Count: 432
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ginkbilobin-2	A, B, C, D	108	Ginkgo biloba	Mutation(s): 0
UniProt
Find proteins for A4ZDL6 (Ginkgo biloba) Explore A4ZDL6 Go to UniProtKB: A4ZDL6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A4ZDL6
Sequence Annotations Expand
Reference Sequence