3A0A | pdb_00003a0a

Structure of (PPG)4-OPG-(PPG)4, monoclinic, twinned crystal

PDB DOI: https://doi.org/10.2210/pdb3A0A/pdb

Classification: STRUCTURAL PROTEIN
Mutation(s): No

Deposited: 2009-03-13 Released: 2010-03-09
Deposition Author(s): Okuyama, K., Morimoto, T., Hongo, C., Katagiri, A., Tanaka, Y., Nishino, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free:
0.182 (Depositor), 0.182 (DCC)
R-Value Work:
0.140 (Depositor), 0.140 (DCC)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of (PPG)4-OPG-(PPG)4

Okuyama, K., Morimoto, T., Hongo, C., Tanaka, Y., Nishino, N.

To be published.

Macromolecule Content

Total Structure Weight: 13.77 kDa
Atom Count: 1,043
Modeled Residue Count: 135
Deposited Residue Count: 162
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
collagen-like peptide	A, B, C, D, E A, B, C, D, E, F	27	N/A	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Non-standard Monomers 1 Unique
ID	Chains	Type	Formula	2D Diagram
HYP Query on HYP	A, B, C, D, E A, B, C, D, E, F	L-PEPTIDE LINKING	C₅ H₉ N O₃

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.36 Å
R-Value Free: 0.182 (Depositor), 0.182 (DCC)
R-Value Work: 0.140 (Depositor), 0.140 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 26.007	α = 90
b = 26.538	β = 89.99
c = 80.146	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
SHELXL-97	refinement
CrystalClear	data collection
CrystalClear	data reduction
CrystalClear	data scaling
X-PLOR	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2010-03-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2010-03-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description