394D | pdb_0000394d

CRYSTAL STRUCTURE OF TWO SELF-COMPLEMENTARY CHIMERIC DECAMERS D(CCGG)R(C)D(GCCGG) AND D(CCGG)R(CG)D(CCGG)

• PDB DOI: https://doi.org/10.2210/pdb394D/pdb
• NAKB: 394D

• Classification: DNA-RNA HYBRID
• Mutation(s): No 


• Deposited: 1998-04-29 Released: 1998-05-01 
• Deposition Author(s): Ban, C., Sundaralingam, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Work: 
  0.177 (Depositor) 
• R-Value Observed: 
  0.177 (Depositor) 

Literature

Crystal Structure of Two Self-Complementary Chimeric Decamers d(CCGG)r(C)d(GCCGG) and d(CCGG)r(CG)d(CCGG)

Ban, C., Ramakrishnan, B., Sundaralingam, M.

To be published.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 6.16 kDa 
• Atom Count: 470 
• Modeled Residue Count: 20 
• Deposited Residue Count: 20 
• Unique hybrid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA/RNA (5'-D(*CP*CP*GP*GP)-R(*CP*GP)-D(*CP*CP*GP*G)-3')	A, B	10	N/A

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Work:  0.177 (Depositor) 
• R-Value Observed: 0.177 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 25.65	α = 90
b = 45.53	β = 90
c = 47.93	γ = 90

Software Package:

Software Name	Purpose
XENGEN	data collection
XENGEN	data reduction
X-PLOR	refinement
XENGEN	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 1998-05-01 
Deposition Author(s): Ban, C., Sundaralingam, M.

Revision History  

• Version 1.0: 1998-05-01
  Type: Initial release
  
• Version 1.1: 2008-05-22
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references