36HW | pdb_000036hw

Salmonella Flagellar Export Apparatus FlhA transmembrane domain nonamer in the context of the intact basal body


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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This is version 1.0 of the entry. See complete history

Literature

Structure of the proton-powered secretion motor at the heart of the bacterial flagellum.

Johnson, M.K.Johnson, S.Deme, J.C.Alfaro-Alvarado, L.Bryant, O.J.Chevance, F.F.V.Hughes, K.T.Lea, S.M.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.06.13.732081
  • Primary Citation Related Structures: 
    36HU, 36HW, 36IS

  • PubMed Abstract: 

    Bacterial type III secretion systems export proteins across the inner membrane using the proton-motive force (PMF), but how proton flow is coupled to opening of the export channel is unknown XX,XX . Here we present single-particle cryo-EM structures at 2.5-4.2 Å resolution of the intact flagellar Export Apparatus from Salmonella enterica , obtained using optimized extraction conditions of the endogenous assembly that retain the complete transmembrane complex. The transmembrane domain of FlhA forms a nonameric funnel-shaped basket beneath the Export Gate, with each subunit harboring a buried pathway of conserved hydrophilic residues spanning the hydrophobic core of the membrane. FlhB is resolved for the first time within the intact gate, revealing helices that thread through the FlhA channel, completely sealing it at rest. A symmetry-free reconstruction captures one FlhA protomer hinged outward at the water-filled cavity, breaking the rotational symmetry. Together, these structures define the architecture of the proton-transducing element of the type III secretion system and suggest a rotary gating mechanism, with parallels to the F 0 motor of ATP synthase, in which PMF-driven conformational cycling of FlhA drives regulated opening of the export channel.


  • Organizational Affiliation
    • Structural Biology, St Jude Children's Research Hospital, Memphis, TN 38105, USA.

Macromolecule Content 

  • Total Structure Weight: 674.22 kDa 
  • Atom Count: 20,781 
  • Modeled Residue Count: 2,799 
  • Deposited Residue Count: 6,228 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Flagellar biosynthesis protein FlhA692Salmonella enterica subsp. enterica serovar TyphimuriumMutation(s): 0 
UniProt
Find proteins for P40729 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720))
Explore P40729 
Go to UniProtKB:  P40729
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40729
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.55 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX2.0_5936
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United States--

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-15
    Type: Initial release