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 32PZ | pdb_000032pz

Cryo-EM structure of Saccharomyces cerevisiae Erv14-Qdr2 complex in detergent


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Starting Model: in silico
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wwPDB Validation 3D Report Full Report

Validation slider image for 32PZ

This is version 1.1 of the entry. See complete history. 

Literature

Cornichon receptors couple membrane adaptation to cargo selection during ER export.

Tunyi, J., Adams, O., Holton, S., Biadun, M., Bernhardt, N., Kuteyi, G., Pantoja, O., Forrest, L.R., Parker, J.L., Newstead, S.

(2026) bioRxiv 

  • DOI: https://doi.org/10.64898/2026.08.07.743479
  • Primary Citation Related Structures: 
    32PZ, 32QA, 32QB

  • PubMed Abstract: 

    Selective export of membrane proteins from the endoplasmic reticulum (ER) is fundamental for eukaryotic cell biology, yet how trafficking receptors coordinate cargo recognition with membrane adaptation and COPII recruitment remains unknown. Cornichon homolog (CNIH) proteins comprise a conserved family of trafficking receptors that mediate ER export of ion channels, G protein-coupled receptors (GPCRs), ATP-binding cassette (ABC) and solute carrier (SLC) transporters. Here, we determine cryo-electron microscopy structures of the prototypical cornichon receptor Erv14 bound to an SLC transporter in detergent and lipid nanodiscs. We show that cargo recognition is mediated by a dynamic network of interactions, in which structural lipids stabilize the receptor-cargo interface. Nanodisc structures reveal the assembly of a second Erv14 receptor that remodels the receptor-cargo interface in response to membrane architecture, thereby reducing local membrane thickness and providing direct structural evidence that cornichon receptors buffer hydrophobic mismatch during membrane protein biogenesis. Structural and trafficking analyses further show that the second receptor recruits the COPII adaptor Sec24, coupling membrane remodelling to cargo export. Together, our findings establish that cornichon receptors couple lipid-mediated membrane adaptation with cargo selection through sequential receptor assembly, linking membrane protein folding to selective COPII-mediated ER export. Cornichon receptors integrate membrane adaptation with cargo recognition to coordinate membrane protein quality control and selective ER export.

Macromolecule Content 

  • Total Structure Weight: 80.5 kDa 
  • Atom Count: 5,135 
  • Modeled Residue Count: 627 
  • Deposited Residue Count: 695 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ER-derived vesicles protein ERV14146Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: ERV14, YGL054C
UniProt
Find proteins for P53173 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P53173 
Go to UniProtKB:  P53173
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP53173
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Quinidine resistance protein 2549Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: QDR2, YIL121W
UniProt
Find proteins for P40474 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40474 
Go to UniProtKB:  P40474
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40474
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
Y01

Query on Y01



Download:Ideal Coordinates CCD File
C [auth A],
D [auth A],
H [auth B]
CHOLESTEROL HEMISUCCINATE
C31 H50 O4
WLNARFZDISHUGS-MIXBDBMTSA-N
ERG

Query on ERG



Download:Ideal Coordinates CCD File
E [auth B],
F [auth B],
I [auth B]
ERGOSTEROL
C28 H44 O
DNVPQKQSNYMLRS-APGDWVJJSA-N
NKN

Query on NKN



Download:Ideal Coordinates CCD File
G [auth B](2R)-2-hydroxy-3-(phosphonooxy)propyl tetradecanoate
C17 H35 O7 P
FAZBDRGXCKPVJU-MRXNPFEDSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.83 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC4.7.1
MODEL REFINEMENTPHENIX1.29.1-4487
MODEL REFINEMENTCoot0.9.8.2
MODEL REFINEMENTISOLDE1.10.1

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom219531/Z/19/Z

Revision History  (Full details and data files)

  • Version 1.0: 2026-08-19
    Type: Initial release
  • Version 1.1: 2026-10-21
    Changes: Data collection, Database references