31EZ | pdb_000031ez

UapA (Q408E) in MSP1E3D1 nanodiscs, Xanthine-bound state


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.48 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 31EZ

This is version 1.1 of the entry. See complete history

Literature

Cryo-EM of the eukaryotic purine transporter UapA demonstrates intramolecular and lipid regulation of transport.

Broutzakis, G.Pyrris, Y.Akrani, I.Neuhaus, A.Mikros, E.Diallinas, G.Gatsogiannis, C.

(2026) Proc Natl Acad Sci U S A 123: e2513585123-e2513585123

  • DOI: https://doi.org/10.1073/pnas.2513585123
  • Primary Citation Related Structures: 
    31EW, 31EY, 31EZ

  • PubMed Abstract: 

    Members of the nucleobase ascorbate transporter (NAT) family (SLC23) are elevator-type transporters that are responsible for the uptake of nucleobases and ascorbate. In fungi, NAT members are also responsible for the specific uptake of antifungal nucleobase analogues, such as oxypurinol, allopurinol, or 8-azaguanine. Here, we report nearly full-length cryo-EM structures of UapA, a high-affinity purine transporter from the model fungus Aspergillus nidulans , in inward-facing apo- and substrate-loaded conformations at 2.06 to 3.5 Å in detergent and lipid nanodiscs. The high-resolution structures reveal the role of water molecules and lipids in substrate binding, specificity, transporter dimerization, and activity. Notably, the N-tail of UapA is found to be structured, interacting with both the core and scaffold domains, which in combination with functional data suggests a dual role in trafficking and transport dynamics. Overall, our study provides unprecedented structural and functional insights into an elevator-type fungal transporter, which may well contribute to the exploitation of NAT transporters as specific gateways for targeted pharmacological antifungal approaches.


  • Organizational Affiliation
    • Department of Biology, National and Kapodistrian University of Athens, Athens 15781, Greece.

Macromolecule Content 

  • Total Structure Weight: 123.2 kDa 
  • Atom Count: 8,648 
  • Modeled Residue Count: 1,040 
  • Deposited Residue Count: 1,040 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Uric acid-xanthine permease
A, B
520Aspergillus nidulans FGSC A4Mutation(s): 1 
Gene Names: uapAAN6932
UniProt
Find proteins for Q07307 (Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139))
Explore Q07307 
Go to UniProtKB:  Q07307
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ07307
Sequence Annotations
Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
ERG

Query on ERG



Download:Ideal Coordinates CCD File
HA [auth B]
I [auth A]
MA [auth B]
N [auth A]
TA [auth B]
HA [auth B],
I [auth A],
MA [auth B],
N [auth A],
TA [auth B],
U [auth A],
UA [auth B],
V [auth A],
VA [auth B],
W [auth A]
ERGOSTEROL
C28 H44 O
DNVPQKQSNYMLRS-APGDWVJJSA-N
MYR

Query on MYR



Download:Ideal Coordinates CCD File
AA [auth B]
BA [auth B]
C [auth A]
CA [auth B]
D [auth A]
AA [auth B],
BA [auth B],
C [auth A],
CA [auth B],
D [auth A],
DA [auth B],
E [auth A],
EA [auth B],
F [auth A],
FA [auth B],
G [auth A],
GA [auth B],
H [auth A],
IA [auth B],
J [auth A],
JA [auth B],
K [auth A],
KA [auth B],
L [auth A],
LA [auth B],
M [auth A],
NA [auth B],
O [auth A],
OA [auth B],
P [auth A],
PA [auth B],
Q [auth A],
QA [auth B],
R [auth A],
RA [auth B],
S [auth A],
SA [auth B],
T [auth A],
WA [auth B],
X [auth A],
Y [auth A]
MYRISTIC ACID
C14 H28 O2
TUNFSRHWOTWDNC-UHFFFAOYSA-N
XAN
(Subject of Investigation/LOI)

Query on XAN



Download:Ideal Coordinates CCD File
XA [auth B],
Z [auth A]
XANTHINE
C5 H4 N4 O2
LRFVTYWOQMYALW-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.48 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONcryoSPARC4.5.1

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany496113311
German Research Foundation (DFG)Germany211/667-1

Revision History  (Full details and data files)

  • Version 1.0: 2026-07-01
    Type: Initial release
  • Version 1.1: 2026-07-08
    Changes: Data collection, Database references