30JE | pdb_000030je

Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b

PDB DOI: https://doi.org/10.2210/pdb30JE/pdb
Entry: 30JE supersedes: 9SV8
EM Map EMD-57830: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Human alphaherpesvirus 2, Homo sapiens
Expression System: Cricetulus griseus, Homo sapiens
Mutation(s): Yes

Deposited: 2026-04-29 Released: 2026-05-06
Deposition Author(s): Rojas Rechy, M.H., Atanasiu, D., Hook, L.M., Cairns, M.T., Saw, W.T., Cahill, A., Guo, Z., Calabrese, A.N., Ranson, N.A., Friedman, H.M., Cohen, G.H., Fontana, J.
Funding Organization(s): Ministerio de Ciencia e Innovacion (MCIN), Agencia Estatal de Investigacion (AEI), Consejo Nacional de Ciencia y Tecnologia (CONACYT), Engineering and Physical Sciences Research Council, Wellcome Trust, Wolfson Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b

Rojas Rechy, M.H., Atanasiu, D., Hook, L.M., Cairns, M.T., Saw, W.T., Cahill, A., Guo, Z., Calabrese, A.N., Ranson, N.A., Friedman, H.M., Cohen, G.H., Fontana, J.

To be published.

Macromolecule Content

Total Structure Weight: 228.04 kDa
Atom Count: 7,888
Modeled Residue Count: 996
Deposited Residue Count: 2,045
Unique protein chains: 3

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Envelope glycoprotein C	A	485	Human alphaherpesvirus 2	Mutation(s): 0 Gene Names: gC, UL44
UniProt
Find proteins for P03173 (Human herpesvirus 2 (strain G)) Explore P03173 Go to UniProtKB: P03173
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P03173
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement C3 beta chain	B	645	Homo sapiens	Mutation(s): 1 Gene Names: C3, CPAMD1
UniProt & NIH Common Fund Data Resources
Find proteins for P01024 (Homo sapiens) Explore P01024 Go to UniProtKB: P01024
PHAROS: P01024 GTEx: ENSG00000125730
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01024
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Complement C3	C	915	Homo sapiens	Mutation(s): 0 Gene Names: C3, CPAMD1
UniProt & NIH Common Fund Data Resources
Find proteins for P01024 (Homo sapiens) Explore P01024 Go to UniProtKB: P01024
PHAROS: P01024 GTEx: ENSG00000125730
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P01024
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	cryoSPARC	4.6.2

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-05-06

Deposition Author(s):

This entry supersedes: 9SV8

Funding Organization	Location	Grant Number
Ministerio de Ciencia e Innovacion (MCIN)	Spain	PID2023-149259NB-I00
Agencia Estatal de Investigacion (AEI)	Spain	PID2023-149259NB-I00
Consejo Nacional de Ciencia y Tecnologia (CONACYT)	Mexico	773992
Engineering and Physical Sciences Research Council	United Kingdom	EP/W524372/1
Wellcome Trust	United Kingdom	220628/Z/20/Z
Wellcome Trust	United Kingdom	221524/Z/20/Z
Wellcome Trust	United Kingdom	223810/Z/21/Z
Wolfson Foundation	United Kingdom	PR/jw/md/22597