2Z13 | pdb_00002z13

Crystal structure of the N-terminal DUF1126 in human EF-hand domain

• PDB DOI: https://doi.org/10.2210/pdb2Z13/pdb

• Classification: Structural genomics, unknown function
• Organism(s): Homo sapiens
• Mutation(s): Yes 


• Deposited: 2007-05-07 Released: 2007-11-13 
• Deposition Author(s): Saito, K., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.84 Å
• R-Value Free: 
  0.227 (Depositor), 0.225 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.185 (DCC) 
• R-Value Observed: 
  0.181 (Depositor) 

Literature

Crystal structure of the N-terminal DUF1126 in human EF-hand domain

Saito, K., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 15.34 kDa 
• Atom Count: 1,164 
• Modeled Residue Count: 117 
• Deposited Residue Count: 133 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
EF-hand domain-containing family member C2	A	133	Homo sapiens	Mutation(s): 1  Gene Names: EFHC2
UniProt & NIH Common Fund Data Resources
Find proteins for Q5JST6 (Homo sapiens) Explore Q5JST6  Go to UniProtKB:  Q5JST6
PHAROS:  Q5JST6 GTEx:  ENSG00000183690

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.84 Å
• R-Value Free:  0.227 (Depositor), 0.225 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.185 (DCC) 
• R-Value Observed: 0.181 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.46	α = 90
b = 35.28	β = 112.64
c = 39.15	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-11-13 
Deposition Author(s): Saito, K., Kishishita, S., Nishino, A., Murayama, K., Terada, T., Shirouzu, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-11-13
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2021-11-10
  Changes: Database references
• Version 1.3: 2024-05-29
  Changes: Data collection