2Z11 | pdb_00002z11

Crystal structure of putative acetyltransferase

PDB DOI: https://doi.org/10.2210/pdb2Z11/pdb

Classification: TRANSFERASE
Organism(s): Thermus thermophilus HB27
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-05-07 Released: 2007-11-13
Deposition Author(s): Murayama, K., Kato-Murayama, M., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free:
0.232 (Depositor), 0.218 (DCC)
R-Value Work:
0.204 (Depositor), 0.190 (DCC)

wwPDB Validation 3D Report Full Report

Validation slider image for 2Z11

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of putative acetyltransferase

Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 22.29 kDa
Atom Count: 1,657
Modeled Residue Count: 188
Deposited Residue Count: 194
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal-protein-alanine acetyltransferase	A	194	Thermus thermophilus HB27	Mutation(s): 0 EC: 2.3.1.128
UniProt
Find proteins for Q72HN8 (Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27)) Explore Q72HN8 Go to UniProtKB: Q72HN8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q72HN8
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
IYR Query on IYR	A	L-PEPTIDE LINKING	C₉ H₁₀ I N O₃		TYR

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.232 (Depositor), 0.218 (DCC)
R-Value Work: 0.204 (Depositor), 0.190 (DCC)

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 70.956	α = 90
b = 70.956	β = 90
c = 99.086	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
CrystalClear	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-11-13

Deposition Author(s):

Kato-Murayama, M.

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-11-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.