2Z0R | pdb_00002z0r

Crystal structure of hypothetical protein TTHA0547

PDB DOI: https://doi.org/10.2210/pdb2Z0R/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Thermus thermophilus HB8
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2007-05-07 Released: 2007-11-13
Deposition Author(s): Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.278 (Depositor), 0.279 (DCC)
R-Value Work:
0.229 (Depositor), 0.233 (DCC)
R-Value Observed:
0.229 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Crystal structure of hypothetical protein TTHA0547

Murayama, K., Kato-Murayama, M., Terada, T., Shirouzu, M., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 141.64 kDa
Atom Count: 9,640
Modeled Residue Count: 1,181
Deposited Residue Count: 1,236
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein TTHA0547	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	103	Thermus thermophilus HB8	Mutation(s): 0
UniProt
Find proteins for Q5SKU6 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SKU6 Go to UniProtKB: Q5SKU6
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5SKU6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain Z [auth I] SDF format, chain W [auth G] SDF format, chain U [auth F] SDF format, chain R [auth E] SDF format, chain P [auth D] SDF format, chain M [auth A] SDF format, chain EA [auth L] SDF format, chain BA [auth K] MOL2 format, chain Z [auth I] MOL2 format, chain W [auth G] MOL2 format, chain U [auth F] MOL2 format, chain R [auth E] MOL2 format, chain P [auth D] MOL2 format, chain M [auth A] MOL2 format, chain EA [auth L] MOL2 format, chain BA [auth K] mmCIF format, chain Z [auth I] mmCIF format, chain W [auth G] mmCIF format, chain U [auth F] mmCIF format, chain R [auth E] mmCIF format, chain P [auth D] mmCIF format, chain M [auth A] mmCIF format, chain EA [auth L] mmCIF format, chain BA [auth K]	BA [auth K] EA [auth L] M [auth A] P [auth D] R [auth E] BA [auth K], EA [auth L], M [auth A], P [auth D], R [auth E], U [auth F], W [auth G], Z [auth I]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain BA [auth K] Focus chain EA [auth L] Focus chain M [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Z [auth I] Interactions & Density Focus chain BA [auth K] Focus chain EA [auth L] Focus chain M [auth A] Focus chain P [auth D] Focus chain R [auth E] Focus chain U [auth F] Focus chain W [auth G] Focus chain Z [auth I]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain Y [auth G] SDF format, chain X [auth G] SDF format, chain V [auth F] SDF format, chain T [auth E] SDF format, chain S [auth E] SDF format, chain Q [auth D] SDF format, chain O [auth C] SDF format, chain N [auth B] SDF format, chain DA [auth K] SDF format, chain CA [auth K] SDF format, chain AA [auth I] MOL2 format, chain Y [auth G] MOL2 format, chain X [auth G] MOL2 format, chain V [auth F] MOL2 format, chain T [auth E] MOL2 format, chain S [auth E] MOL2 format, chain Q [auth D] MOL2 format, chain O [auth C] MOL2 format, chain N [auth B] MOL2 format, chain DA [auth K] MOL2 format, chain CA [auth K] MOL2 format, chain AA [auth I] mmCIF format, chain Y [auth G] mmCIF format, chain X [auth G] mmCIF format, chain V [auth F] mmCIF format, chain T [auth E] mmCIF format, chain S [auth E] mmCIF format, chain Q [auth D] mmCIF format, chain O [auth C] mmCIF format, chain N [auth B] mmCIF format, chain DA [auth K] mmCIF format, chain CA [auth K] mmCIF format, chain AA [auth I]	AA [auth I] CA [auth K] DA [auth K] N [auth B] O [auth C] AA [auth I], CA [auth K], DA [auth K], N [auth B], O [auth C], Q [auth D], S [auth E], T [auth E], V [auth F], X [auth G], Y [auth G]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain AA [auth I] Focus chain CA [auth K] Focus chain DA [auth K] Focus chain N [auth B] Focus chain O [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain V [auth F] Focus chain X [auth G] Focus chain Y [auth G] Interactions & Density Focus chain AA [auth I] Focus chain CA [auth K] Focus chain DA [auth K] Focus chain N [auth B] Focus chain O [auth C] Focus chain Q [auth D] Focus chain S [auth E] Focus chain T [auth E] Focus chain V [auth F] Focus chain X [auth G] Focus chain Y [auth G]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.278 (Depositor), 0.279 (DCC)
R-Value Work: 0.229 (Depositor), 0.233 (DCC)
R-Value Observed: 0.229 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.501	α = 90
b = 94.297	β = 96.77
c = 101.734	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-11-13

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-11-13
Type: Initial release
Version 1.1: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.2: 2024-10-09
Changes: Data collection, Database references, Derived calculations, Structure summary