2YXM | pdb_00002yxm

Crystal structure of I-set domain of human Myosin Binding ProteinC

• PDB DOI: https://doi.org/10.2210/pdb2YXM/pdb

• Classification: CELL ADHESION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2007-04-26 Released: 2007-10-30 
• Deposition Author(s): Kishishita, S., Ohsawa, N., Murayama, K., Chen, L., Liu, Z., Terada, T., Shirouzu, M., Wang, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.51 Å
• R-Value Free: 
  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work: 
  0.196 (Depositor), 0.206 (DCC) 
• R-Value Observed: 
  0.196 (Depositor) 

Literature

Crystal structure of I-set domain of human Myosin Binding ProteinC

Kishishita, S., Ohsawa, N., Murayama, K., Terada, T., Chen, L., Liu, Z., Shirouzu, M., Wang, B., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 11.09 kDa 
• Atom Count: 861 
• Modeled Residue Count: 92 
• Deposited Residue Count: 100 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Myosin-binding protein C, slow-type	A	100	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q00872 (Homo sapiens) Explore Q00872  Go to UniProtKB:  Q00872
PHAROS:  Q00872 GTEx:  ENSG00000196091

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.51 Å
• R-Value Free:  0.212 (Depositor), 0.218 (DCC) 
• R-Value Work:  0.196 (Depositor), 0.206 (DCC) 
• R-Value Observed: 0.196 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.199	α = 90
b = 55.199	β = 90
c = 70.134	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
SOLVE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-10-30 
Deposition Author(s): Kishishita, S., Ohsawa, N., Murayama, K., Chen, L., Liu, Z., Terada, T., Shirouzu, M., Wang, B., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2007-10-30
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2024-03-13
  Changes: Data collection, Database references