2YUJ | pdb_00002yuj

Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1

PDB DOI: https://doi.org/10.2210/pdb2YUJ/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-06 Released: 2008-04-15
Deposition Author(s): Saito, K., Tomizawa, T., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

wwPDB Validation 3D Report Full Report

Validation slider image for 2YUJ

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1

Saito, K., Tomizawa, T., Kigawa, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 21.27 kDa
Atom Count: 1,487
Modeled Residue Count: 190
Deposited Residue Count: 190
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin fusion degradation 1-like	A	190	Homo sapiens	Mutation(s): 0 Gene Names: AB1165_B04
UniProt & NIH Common Fund Data Resources
Find proteins for Q92890 (Homo sapiens) Explore Q92890 Go to UniProtKB: Q92890
PHAROS: Q92890 GTEx: ENSG00000070010
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q92890
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-04-15

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-04-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2020-01-29
Changes: Data collection, Database references, Derived calculations, Structure summary
Version 1.3: 2024-05-01
Changes: Data collection, Database references

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.