2YU6 | pdb_00002yu6

Solution structure of the YTH domain in YTH domain-containing protein 2

PDB DOI: https://doi.org/10.2210/pdb2YU6/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-05 Released: 2007-10-09
Deposition Author(s): Endo, R., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YU6

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the YTH domain in YTH domain-containing protein 2

Endo, R., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 16.14 kDa
Atom Count: 1,140
Modeled Residue Count: 141
Deposited Residue Count: 141
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YTH domain-containing protein 2	A	141	Homo sapiens	Mutation(s): 0 Gene Names: YTHDC2 EC: 3.6.4.13
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H6S0 (Homo sapiens) Explore Q9H6S0 Go to UniProtKB: Q9H6S0
PHAROS: Q9H6S0 GTEx: ENSG00000047188
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9H6S0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-09

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.