2YT6 | pdb_00002yt6

Solution structure of the SH3_1 domain of Yamaguchi sarcoma viral (v-yes) oncogene homolog 1

PDB DOI: https://doi.org/10.2210/pdb2YT6/pdb

Classification: CELL CYCLE
Organism(s): Mus musculus
Mutation(s): No

Deposited: 2007-04-05 Released: 2008-04-08
Deposition Author(s): Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YT6

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the SH3_1 domain of Yamaguchi sarcoma viral (v-yes) oncogene homolog 1

Dang, W., Muto, Y., Inoue, M., Kigawa, T., Shirouzu, M., Tarada, T., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 11.64 kDa
Atom Count: 821
Modeled Residue Count: 109
Deposited Residue Count: 109
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530076O17 product:Yamaguchi sarcoma viral (v-yes) oncogene homolog	A	109	Mus musculus	Mutation(s): 0 Gene Names: Yes1 EC: 2.7.10.2
UniProt
Find proteins for Q04736 (Mus musculus) Explore Q04736 Go to UniProtKB: Q04736
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q04736
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations, structures with the lowest energy, target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2008-04-08

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2008-04-08
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.