2YSR | pdb_00002ysr

Solution structure of the DEP domain from human DEP domain-containing protein 1

PDB DOI: https://doi.org/10.2210/pdb2YSR/pdb

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-03 Released: 2007-10-09
Deposition Author(s): Zhang, H.P., Hayahsi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YSR

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the DEP domain from human DEP domain-containing protein 1

Zhang, H.P., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 12.18 kDa
Atom Count: 860
Modeled Residue Count: 105
Deposited Residue Count: 105
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
DEP domain-containing protein 1	A	105	Homo sapiens	Mutation(s): 0 Gene Names: DEPDC1
UniProt & NIH Common Fund Data Resources
Find proteins for Q5TB30 (Homo sapiens) Explore Q5TB30 Go to UniProtKB: Q5TB30
PHAROS: Q5TB30 GTEx: ENSG00000024526
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5TB30
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-09

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.