2YSQ | pdb_00002ysq

Solution structure of the SH3 domain from Rho guanine nucleotide exchange factor 9

PDB DOI: https://doi.org/10.2210/pdb2YSQ/pdb
BMRB: 11228

Classification: SIGNALING PROTEIN
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-03 Released: 2007-10-09
Deposition Author(s): Qin, X.R., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YSQ

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the SH3 domain from Rho guanine nucleotide exchange factor 9

Qin, X.R., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 8.84 kDa
Atom Count: 624
Modeled Residue Count: 81
Deposited Residue Count: 81
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Rho guanine nucleotide exchange factor 9	A	81	Homo sapiens	Mutation(s): 0 Gene Names: ARHGEF9, KIAA0424
UniProt & NIH Common Fund Data Resources
Find proteins for O43307 (Homo sapiens) Explore O43307 Go to UniProtKB: O43307
PHAROS: O43307 GTEx: ENSG00000131089
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O43307
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,structures with the lowest energy,target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-09

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-09
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.