2YRE | pdb_00002yre

Solution structure of the zinc finger domains (1-87) from human F-box only protein

PDB DOI: https://doi.org/10.2210/pdb2YRE/pdb

Classification: PROTEIN BINDING
Organism(s): Homo sapiens
Mutation(s): No

Deposited: 2007-04-02 Released: 2007-10-02
Deposition Author(s): Nagashima, T., Suetake, T., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Experimental Data Snapshot

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

wwPDB Validation 3D Report Full Report

Validation slider image for 2YRE

This is version 1.3 of the entry. See complete history.

Literature

Solution structure of the zinc finger domains (1-87) from human F-box only protein

Nagashima, T., Suetake, T., Hayashi, F., Yokoyama, S.

To be published.

Macromolecule Content

Total Structure Weight: 10.96 kDa
Atom Count: 739
Modeled Residue Count: 100
Deposited Residue Count: 100
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
F-box only protein 30	A	100	Homo sapiens	Mutation(s): 0 Gene Names: FBXO30, FBX30
UniProt & NIH Common Fund Data Resources
Find proteins for Q8TB52 (Homo sapiens) Explore Q8TB52 Go to UniProtKB: Q8TB52
PHAROS: Q8TB52 GTEx: ENSG00000118496
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8TB52
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN Query on ZN Download:Ideal Coordinates CCD File SDF format, chain E [auth A] SDF format, chain D [auth A] SDF format, chain C [auth A] SDF format, chain B [auth A] MOL2 format, chain E [auth A] MOL2 format, chain D [auth A] MOL2 format, chain C [auth A] MOL2 format, chain B [auth A] mmCIF format, chain E [auth A] mmCIF format, chain D [auth A] mmCIF format, chain C [auth A] mmCIF format, chain B [auth A]	B [auth A], C [auth A], D [auth A], E [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain B [auth A] Focus chain C [auth A] Focus chain D [auth A] Focus chain E [auth A]

Experimental Data & Validation

Experimental Data

Method: SOLUTION NMR
Conformers Calculated: 100
Conformers Submitted: 20
Selection Criteria: structures with the least restraint violations,target function

Structure Validation

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Entry History

Deposition Data

Released Date: 2007-10-02

Deposition Author(s):

RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History (Full details and data files)

Version 1.0: 2007-10-02
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2022-03-16
Changes: Data collection, Database references, Derived calculations
Version 1.3: 2024-05-29
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.