2YFK | pdb_00002yfk

Crystal structure of a putative transcarbamoylase from Enterococcus faecalis

PDB DOI: https://doi.org/10.2210/pdb2YFK/pdb

Classification: TRANSFERASE
Organism(s): Enterococcus faecalis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2011-04-06 Released: 2012-05-02
Deposition Author(s): Polo, L.M., Fita, I., Rubio, V.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free:
0.202 (Depositor), 0.215 (DCC)
R-Value Work:
0.169 (Depositor), 0.171 (DCC)
R-Value Observed:
0.171 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of a Putative Transcarbamoylase from Enterococcus Faecalis with Carbamoyl Phosphate

Polo, L.M., Rubio, V.

To be published.

Macromolecule Content

Total Structure Weight: 94.52 kDa
Atom Count: 6,056
Modeled Residue Count: 771
Deposited Residue Count: 836
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ASPARTATE/ORNITHINE CARBAMOYLTRANSFERASE	A, B	418	Enterococcus faecalis	Mutation(s): 0 EC: 2.1.3

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.55 Å
R-Value Free: 0.202 (Depositor), 0.215 (DCC)
R-Value Work: 0.169 (Depositor), 0.171 (DCC)
R-Value Observed: 0.171 (Depositor)

Space Group: P 6₃

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 117.368	α = 90
b = 117.368	β = 90
c = 120.232	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2012-05-02

Deposition Author(s):

Polo, L.M.

Fita, I.

Rubio, V.

Revision History (Full details and data files)

Version 1.0: 2012-05-02
Type: Initial release
Version 1.1: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.