2X8A | pdb_00002x8a

Human Nuclear Valosin containing protein Like (NVL), C-terminal AAA- ATPase domain

• PDB DOI: https://doi.org/10.2210/pdb2X8A/pdb

• Classification: NUCLEAR PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2010-03-08 Released: 2010-03-16 
• Deposition Author(s): Moche, M., Schuetz, P., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Kraulis, P., Nordlund, P., Nyman, T., Persson, C., Sehic, A., Siponen, M.I., Svensson, L., Thorsell, A.G., Tresaugues, L., VanDenBerg, S., Wahlberg, E., Weigelt, J., Welin, M., Wisniewska, M., Schuler, H.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.250 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.210 (Depositor), 0.233 (DCC) 
• R-Value Observed: 
  0.214 (Depositor) 

Literature

Human Nuclear Valosin Containing Protein Like (Nvl) , C-Terminal Aaa-ATPase Domain

Moche, M., Schuetz, P., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Kraulis, P., Nordlund, P., Nyman, T., Persson, C., Sehic, A., Siponen, M.I., Svensson, L., Thorsell, A.G., Tresaugues, L., Vandenberg, S., Wahlberg, E., Weigelt, J., Welin, M., Wisniewska, M., Schuler, H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 30 kDa 
• Atom Count: 1,752 
• Modeled Residue Count: 237 
• Deposited Residue Count: 274 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
NUCLEAR VALOSIN-CONTAINING PROTEIN-LIKE	A	274	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O15381 (Homo sapiens) Explore O15381  Go to UniProtKB:  O15381
PHAROS:  O15381 GTEx:  ENSG00000143748

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
PO4	B [auth A], C [auth A]	PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.250 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.210 (Depositor), 0.233 (DCC) 
• R-Value Observed: 0.214 (Depositor) 

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 77.989	α = 90
b = 77.989	β = 90
c = 86.038	γ = 120

Software Package:

Software Name	Purpose
BUSTER-TNT	refinement
XDS	data reduction
SCALA	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-03-16 
Deposition Author(s): Moche, M., Schuetz, P., Arrowsmith, C.H., Berglund, H., Bountra, C., Collins, R., Edwards, A.M., Flodin, S., Flores, A., Graslund, S., Hammarstrom, M., Johansson, I., Kallas, A., Karlberg, T., Kotenyova, T., Kraulis, P., Nordlund, P., Nyman, T., Persson, C., Sehic, A., Siponen, M.I., Svensson, L., Thorsell, A.G., Tresaugues, L., VanDenBerg, S., Wahlberg, E., Weigelt, J., Welin, M., Wisniewska, M., Schuler, H.

Revision History  

• Version 1.0: 2010-03-16
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Derived calculations, Other