Download MendeleyAdenylate Forming Enzymes Involved in Nrps-Independent Siderophore Biosynthesis
Schmelz, S.(2010) Ph D Thesis
2X3K
CO-COMPLEX STRUCTURE OF ACHROMOBACTIN SYNTHETASE PROTEIN D (ACSD) WITH AMP AND SULFATE FROM PECTOBACTERIUM CHRYSANTHEMI
- PDB DOI: https://doi.org/10.2210/pdb2X3K/pdb
- Classification: LIGASE
- Organism(s): Dickeya chrysanthemi
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2010-01-25 Released: 2010-11-10
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.261
- R-Value Work: 0.205
- R-Value Observed: 0.208
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| ACSD | 620 | Dickeya chrysanthemi | Mutation(s): 0 |  | |
UniProt | |||||
Find proteins for Q93AT8 (Dickeya chrysanthemi) Explore Q93AT8 Go to UniProtKB: Q93AT8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q93AT8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| AMP Query on AMP | C [auth A], E [auth B] | ADENOSINE MONOPHOSPHATE C10 H14 N5 O7 P UDMBCSSLTHHNCD-KQYNXXCUSA-N |  | ||
| SO4 Query on SO4 | D [auth A], F [auth B] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.50 Å
- R-Value Free: 0.261
- R-Value Work: 0.205
- R-Value Observed: 0.208
- Space Group: P 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.7 | α = 95 |
| b = 70 | β = 101.9 |
| c = 96 | γ = 94.7 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| MOLREP | phasing |
Entry History
Deposition Data
- Released Date: 2010-11-10 Deposition Author(s): Schmelz, S., Naismith, J.H.
Revision History (Full details and data files)
- Version 1.0: 2010-11-10
Type: Initial release - Version 1.1: 2011-05-07
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-12-20
Changes: Data collection, Database references, Derived calculations, Other, Refinement description
