2X1H | pdb_00002x1h

Crystal structure of the human MGC45594 gene product in complex with raloxifene

• PDB DOI: https://doi.org/10.2210/pdb2X1H/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-12-24 Released: 2010-11-10 
• Deposition Author(s): Shafqat, N., Yue, W.W., Pike, A.C.W., Niesen, F., Ugochukwu, E., Krojer, T., Chaikuad, A., Smee, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free: 
  0.243 (Depositor), 0.207 (DCC) 
• R-Value Work: 
  0.208 (Depositor), 0.206 (DCC) 
• R-Value Observed: 
  0.210 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of the Human Mgc45594 Gene Product in Complex with Raloxifene

Shafqat, N., Yue, W.W., Pike, A.C.W., Niesen, F., Ugochukwu, E., Krojer, T., Chaikuad, A., Smee, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 80.69 kDa 
• Atom Count: 5,824 
• Modeled Residue Count: 679 
• Deposited Residue Count: 724 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2	A, B	362	Homo sapiens	Mutation(s): 0  EC: 1.3.1.48
UniProt & NIH Common Fund Data Resources
Find proteins for Q8N4Q0 (Homo sapiens) Explore Q8N4Q0  Go to UniProtKB:  Q8N4Q0
PHAROS:  Q8N4Q0 GTEx:  ENSG00000180011

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP	F [auth A], J [auth B]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
X1H	G [auth A], H [auth A], K [auth B], L [auth B]	[6-HYDROXY-2-(4-HYDROXYPHENYL)-1-BENZOTHIOPHEN-3-YL](4-METHOXYPHENYL)METHANONE C22 H16 O4 S PYIMIJKXPOXOFJ-UHFFFAOYSA-N
EDO	C [auth A], D [auth A], E [auth A], I [auth B]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.75 Å
• R-Value Free:  0.243 (Depositor), 0.207 (DCC) 
• R-Value Work:  0.208 (Depositor), 0.206 (DCC) 
• R-Value Observed: 0.210 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 46.65	α = 94.32
b = 52.04	β = 91.44
c = 75.44	γ = 102.24

Software Package:

Software Name	Purpose
PHENIX	refinement
MOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-11-10 
Deposition Author(s): Shafqat, N., Yue, W.W., Pike, A.C.W., Niesen, F., Ugochukwu, E., Krojer, T., Chaikuad, A., Smee, C., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

Revision History  

• Version 1.0: 2010-11-10
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description