2WSQ | pdb_00002wsq

MonoTIM mutant RMM0-1, dimeric form.

• PDB DOI: https://doi.org/10.2210/pdb2WSQ/pdb

• Classification: ISOMERASE
• Organism(s): Trypanosoma brucei brucei
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2009-09-08 Released: 2009-09-15 
• Deposition Author(s): Rudino-Pinera, E., Rojas-Trejo, S.P., Arreola, R., Saab-Rincon, G., Soberon, X., Horjales, E.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 
  0.244 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.204 (Depositor), 0.201 (DCC) 
• R-Value Observed: 
  0.208 (Depositor) 

Starting Model: experimental

Literature

Space Group Transition Driven by Temperature and Related to Monomer-Dimer Transition in Solution: The Case of Monomeric Tim of Trypanosoma Brucei Brucei

Rudino-Pinera, E., Rojas-Trejo, S.P., Arreola, R., Saab-Rincon, G., Soberon, X., Horjales, E.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 104.66 kDa 
• Atom Count: 8,904 
• Modeled Residue Count: 968 
• Deposited Residue Count: 968 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TRIOSE PHOSPHATE ISOMERASE, GLYCOSOMAL	A, B, C, D	242	Trypanosoma brucei brucei	Mutation(s): 3  EC: 5.3.1.1
UniProt
Find proteins for P04789 (Trypanosoma brucei brucei) Explore P04789  Go to UniProtKB:  P04789

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SO4	E [auth A], F [auth B], G [auth B], H [auth B], I [auth C], J [auth C], K [auth D], L [auth D]	SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free:  0.244 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.204 (Depositor), 0.201 (DCC) 
• R-Value Observed: 0.208 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 90.882	α = 90
b = 94.082	β = 90
c = 108.885	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-09-15 
Deposition Author(s): Rudino-Pinera, E., Rojas-Trejo, S.P., Arreola, R., Saab-Rincon, G., Soberon, X., Horjales, E.

Revision History  

• Version 1.0: 2009-09-15
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2019-05-15
  Changes: Data collection, Experimental preparation, Other
• Version 1.4: 2023-12-20
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description