2WIZ | pdb_00002wiz

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

PDB DOI: https://doi.org/10.2210/pdb2WIZ/pdb
NAKB: 2WIZ

Classification: HYDROLASE/DNA
Organism(s): Archaeoglobus fulgidus DSM 4304, synthetic construct
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2009-05-18 Released: 2009-05-26
Deposition Author(s): Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free:
0.283 (Depositor), 0.287 (DCC)
R-Value Work:
0.204 (Depositor), 0.223 (DCC)
R-Value Observed:
0.208 (Depositor)

Starting Model: experimental
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This is version 1.2 of the entry. See complete history.

Literature

Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published.

Macromolecule Content

Total Structure Weight: 43.62 kDa
Atom Count: 2,791
Modeled Residue Count: 287
Deposited Residue Count: 318
Unique protein chains: 1
Unique nucleic acid chains: 2

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ARCHAEAL HJC	A, B	139	Archaeoglobus fulgidus DSM 4304	Mutation(s): 0 EC: 3.1.21.10
UniProt
Find proteins for O28314 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28314 Go to UniProtKB: O28314
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O28314
Sequence Annotations Expand
Reference Sequence

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Molecule	Chains	Length	Organism	Image
Entity ID: 2
HALF-JUNCTION	C	20	synthetic construct
Sequence Annotations Expand
Reference Sequence

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Molecule	Chains	Length	Organism	Image
Entity ID: 3
HALF-JUNCTION	D	20	synthetic construct
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.30 Å
R-Value Free: 0.283 (Depositor), 0.287 (DCC)
R-Value Work: 0.204 (Depositor), 0.223 (DCC)
R-Value Observed: 0.208 (Depositor)

Space Group: P 6₂ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 122.65	α = 90
b = 122.65	β = 90
c = 125.51	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2009-05-26

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2009-05-26
Type: Initial release
Version 1.1: 2015-09-30
Changes: Derived calculations, Refinement description, Source and taxonomy, Version format compliance
Version 1.2: 2023-12-13
Changes: Data collection, Database references, Other, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.