2WCZ | pdb_00002wcz

1.6A resolution structure of Archaeoglobus fulgidus Hjc, a Holliday junction resolvase from an archaeal hyperthermophile

• PDB DOI: https://doi.org/10.2210/pdb2WCZ/pdb

• Classification: HYDROLASE
• Organism(s): Archaeoglobus fulgidus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2009-03-18 Released: 2009-03-24 
• Deposition Author(s): Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free: 
  0.224 (Depositor), 0.228 (DCC) 
• R-Value Work: 
  0.181 (Depositor), 0.186 (DCC) 
• R-Value Observed: 
  0.183 (Depositor) 

Starting Models: experimental

Literature

1.6 A Resolution Structure of Archaeoglobus Fulgidus Hjc, a Holliday Junction Resolvase from an Archaeal Hyperthermophile

Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 31.42 kDa 
• Atom Count: 2,086 
• Modeled Residue Count: 236 
• Deposited Residue Count: 278 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HOLLIDAY JUNCTION RESOLVASE	A, B	139	Archaeoglobus fulgidus	Mutation(s): 0  EC: 3.1.21.10
UniProt
Find proteins for O28314 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28314  Go to UniProtKB:  O28314

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CL	C [auth A], D [auth A]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.65 Å
• R-Value Free:  0.224 (Depositor), 0.228 (DCC) 
• R-Value Work:  0.181 (Depositor), 0.186 (DCC) 
• R-Value Observed: 0.183 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.56	α = 90
b = 37.56	β = 90
c = 272.51	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-03-24 
Deposition Author(s): Carolis, C., Koehler, C., Sauter, C., Basquin, J., Suck, D., Toeroe, I.

Revision History  

• Version 1.0: 2009-03-24
  Type: Initial release
  
• Version 1.1: 2011-05-08
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-12-13
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description