2TRC | pdb_00002trc

PHOSDUCIN/TRANSDUCIN BETA-GAMMA COMPLEX


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.277 (Depositor), 0.272 (DCC) 
  • R-Value Work: 
    0.190 (Depositor) 
  • R-Value Observed: 
    0.190 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2TRC

This is version 1.5 of the entry. See complete history

Literature

Crystal structure at 2.4 angstroms resolution of the complex of transducin betagamma and its regulator, phosducin.

Gaudet, R.Bohm, A.Sigler, P.B.

(1996) Cell 87: 577-588

  • DOI: https://doi.org/10.1016/s0092-8674(00)81376-8
  • Primary Citation Related Structures: 
    2TRC

  • PubMed Abstract: 

    The crystal structure of transducin's betagamma subunits complexed with phosducin, which regulates Gtbetagamma activity, has been solved to 2.4 angstroms resolution. Phosducin has two domains that wrap around Gtbetagamma to form an extensive interface. The N-terminal domain binds loops on the "top" Gtbeta surface, overlapping the Gtalpha binding surface, explaining how phosducin blocks Gtbetagamma's interaction with Gtalpha. The C-terminal domain shows structural homology to thioredoxin and binds the outer strands of Gtbeta's seventh and first blades in a manner likely to disrupt Gtbetagamma's normal orientation relative to the membrane and receptor. Phosducin's Ser-73, which when phosphorylated inhibits phosducin's function, points away from Gtbetagamma, toward a large flexible loop. Thus phosphorylation is not likely to affect the interface directly, but rather indirectly through an induced conformational change.


  • Organizational Affiliation
    • Department of Molecular Biophysics and Biochemistry, Howard Hughes Medical Institute, Yale University, New Haven, Connecticut 06511, USA.

Macromolecule Content 

  • Total Structure Weight: 71.35 kDa 
  • Atom Count: 5,067 
  • Modeled Residue Count: 625 
  • Deposited Residue Count: 625 
  • Unique protein chains: 3

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
TRANSDUCINA [auth B]340Bos taurusMutation(s): 0 
UniProt
Find proteins for P62871 (Bos taurus)
Explore P62871 
Go to UniProtKB:  P62871
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP62871
Sequence Annotations
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
TRANSDUCINB [auth G]68Bos taurusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P02698 (Bos taurus)
Explore P02698 
Go to UniProtKB:  P02698
Entity Groups
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UniProt GroupP02698
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Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
PHOSDUCINC [auth P]217Rattus norvegicusMutation(s): 5 
UniProt
Find proteins for P20942 (Rattus norvegicus)
Explore P20942 
Go to UniProtKB:  P20942
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP20942
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.277 (Depositor), 0.272 (DCC) 
  • R-Value Work:  0.190 (Depositor) 
  • R-Value Observed: 0.190 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 75.7α = 90
b = 88.51β = 90
c = 98.87γ = 90
Software Package:
Software NamePurpose
X-PLORrefinement
X-PLORmodel building
SHELXrefinement
SHELXmodel building
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
X-PLORphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 1997-06-05
    Type: Initial release
  • Version 1.1: 2008-03-03
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2019-07-17
    Changes: Data collection, Derived calculations, Other, Refinement description
  • Version 1.4: 2019-08-14
    Changes: Data collection
  • Version 1.5: 2024-11-20
    Changes: Data collection, Database references, Derived calculations, Structure summary