2RT5 | pdb_00002rt5

Structural insights into the recruitment of SMRT by the co-repressor SHARP under phosphorylative regulation


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2RT5

This is version 1.2 of the entry. See complete history

Literature

Structural insights into the recruitment of SMRT by the corepressor SHARP under phosphorylative regulation.

Mikami, S.Kanaba, T.Takizawa, N.Kobayashi, A.Maesaki, R.Fujiwara, T.Ito, Y.Mishima, M.

(2014) Structure 22: 35-46

  • DOI: https://doi.org/10.1016/j.str.2013.10.007
  • Primary Citation Related Structures: 
    2RT5

  • PubMed Abstract: 

    The transcriptional corepressors SMRT/NCoR, components of histone deacetylase complexes, interact with nuclear receptors and many other transcription factors. SMRT is a target for the ubiquitously expressed protein kinase CK2, which is known to phosphorylate a wide variety of substrates. Increasing evidence suggests that CK2 plays a regulatory role in many cellular events, particularly, in transcription. However, little is known about the precise mode of action involved. Here, we report the three-dimensional structure of a SMRT/HDAC1-associated repressor protein (SHARP) in complex with phosphorylated SMRT, as determined by solution NMR. Phosphorylation of the CK2 site on SMRT significantly increased affinity for SHARP. We also confirmed the significance of CK2 phosphorylation by reporter assay and propose a mechanism involving the process of phosphorylation acting as a molecular switch. Finally, we propose that the SPOC domain functions as a phosphorylation binding module.


  • Organizational Affiliation
    • Graduate School of Science and Engineering, Tokyo Metropolitan University, 1-1 Minamiosawa Hachioji 192-0397, Japan.

Macromolecule Content 

  • Total Structure Weight: 19.57 kDa 
  • Atom Count: 1,370 
  • Modeled Residue Count: 177 
  • Deposited Residue Count: 177 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Msx2-interacting protein169Homo sapiensMutation(s): 0 
Gene Names: SHARP
UniProt & NIH Common Fund Data Resources
Find proteins for Q96T58 (Homo sapiens)
Explore Q96T58 
Go to UniProtKB:  Q96T58
PHAROS:  Q96T58
GTEx:  ENSG00000065526 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ96T58
Sequence Annotations
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Reference Sequence
Find similar proteins by:  Sequence   |   3D Structure  
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
peptide from Silencing mediator of retinoic acid and thyroid hormone receptor8Homo sapiensMutation(s): 0 
UniProt & NIH Common Fund Data Resources
Find proteins for Q9Y618 (Homo sapiens)
Explore Q9Y618 
Go to UniProtKB:  Q9Y618
PHAROS:  Q9Y618
GTEx:  ENSG00000196498 
Entity Groups
UniProt GroupQ9Y618
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
B
L-PEPTIDE LINKINGC3 H8 N O6 PSER

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2013-12-04
    Type: Initial release
  • Version 1.1: 2022-08-24
    Changes: Data collection, Database references, Derived calculations
  • Version 1.2: 2024-11-20
    Changes: Data collection, Database references, Structure summary