2RNM | pdb_00002rnm

Structure of The HET-s(218-289) prion in its amyloid form obtained by solid-state NMR


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core

Wasmer, C.Lange, A.Van Melckebeke, H.Siemer, A.B.Riek, R.Meier, B.H.

(2008) Science 319: 1523-1526

  • DOI: https://doi.org/10.1126/science.1151839
  • Primary Citation Related Structures: 
    2RNM

  • PubMed Abstract: 

    Prion and nonprion forms of proteins are believed to differ solely in their three-dimensional structure, which is therefore of paramount importance for the prion function. However, no atomic-resolution structure of the fibrillar state that is likely infectious has been reported to date. We present a structural model based on solid-state nuclear magnetic resonance restraints for amyloid fibrils from the prion-forming domain (residues 218 to 289) of the HET-s protein from the filamentous fungus Podospora anserina. On the basis of 134 intra- and intermolecular experimental distance restraints, we find that HET-s(218-289) forms a left-handed beta solenoid, with each molecule forming two helical windings, a compact hydrophobic core, at least 23 hydrogen bonds, three salt bridges, and two asparagine ladders. The structure is likely to have broad implications for understanding the infectious amyloid state.


  • Organizational Affiliation
    • Physical Chemistry, ETH Zurich, 8093 Zurich, Switzerland.

Macromolecule Content 

  • Total Structure Weight: 43.34 kDa 
  • Atom Count: 3,045 
  • Modeled Residue Count: 395 
  • Deposited Residue Count: 395 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Small s protein
A, B, C, D, E
79Podospora anserinaMutation(s): 0 
UniProt
Find proteins for Q03689 (Podospora anserina)
Explore Q03689 
Go to UniProtKB:  Q03689
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ03689
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2008-04-01
    Type: Initial release
  • Version 1.1: 2009-02-24
    Changes: Version format compliance
  • Version 1.2: 2015-06-17
    Changes: Version format compliance
  • Version 1.3: 2015-07-08
    Changes: Other
  • Version 1.4: 2024-05-01
    Changes: Data collection, Database references