2QVF | pdb_00002qvf

mouse E-cadherin domains 1,2

• PDB DOI: https://doi.org/10.2210/pdb2QVF/pdb

• Classification: CELL ADHESION
• Organism(s): Mus musculus
• Mutation(s): No 


• Deposited: 2007-08-08 Released: 2008-08-12 
• Deposition Author(s): Carroll, K.J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.286 (Depositor), 0.287 (DCC) 
• R-Value Work: 
  0.230 (Depositor) 
• R-Value Observed: 
  0.232 (Depositor) 

Starting Model: experimental

Literature

E-cadherin domains 1,2

Carroll, K.J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 23.42 kDa 
• Atom Count: 1,809 
• Modeled Residue Count: 213 
• Deposited Residue Count: 213 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Epithelial-cadherin (E-cadherin) (Uvomorulin) (Cadherin-1) (ARC-1) (CD324 antigen)	A [auth B]	213	Mus musculus	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for P09803 (Mus musculus) Explore P09803  Go to UniProtKB:  P09803
IMPC:  MGI:88354

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CA	B, C [auth B], D [auth B], E [auth B]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.286 (Depositor), 0.287 (DCC) 
• R-Value Work:  0.230 (Depositor) 
• R-Value Observed: 0.232 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 134.711	α = 90
b = 42.669	β = 111.97
c = 58.132	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-08-12 
Deposition Author(s): Carroll, K.J.

Revision History  

• Version 1.0: 2008-08-12
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-08-30
  Changes: Data collection, Database references, Derived calculations, Refinement description