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 2Q1Z | pdb_00002q1z

Crystal Structure of Rhodobacter sphaeroides SigE in complex with the anti-sigma ChrR


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free: 
    0.329 (Depositor), 0.346 (DCC) 
  • R-Value Work: 
    0.284 (Depositor), 0.317 (DCC) 
  • R-Value Observed: 
    0.286 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 2Q1Z

This is version 1.2 of the entry. See complete history. 

Literature

A conserved structural module regulates transcriptional responses to diverse stress signals in bacteria.

Campbell, E.A., Greenwell, R., Anthony, J.R., Wang, S., Lim, L., Das, K., Sofia, H.J., Donohue, T.J., Darst, S.A.

(2007) Mol Cell 27: 793-805

  • DOI: https://doi.org/10.1016/j.molcel.2007.07.009
  • Primary Citation Related Structures: 
    2Q1Z, 2Z2S

  • PubMed Abstract: 

    A transcriptional response to singlet oxygen in Rhodobacter sphaeroides is controlled by the group IV sigma factor sigma(E) and its cognate anti-sigma ChrR. Crystal structures of the sigma(E)/ChrR complex reveal a modular, two-domain architecture for ChrR. The ChrR N-terminal anti-sigma domain (ASD) binds a Zn(2+) ion, contacts sigma(E), and is sufficient to inhibit sigma(E)-dependent transcription. The ChrR C-terminal domain adopts a cupin fold, can coordinate an additional Zn(2+), and is required for the transcriptional response to singlet oxygen. Structure-based sequence analyses predict that the ASD defines a common structural fold among predicted group IV anti-sigmas. These ASDs are fused to diverse C-terminal domains that are likely involved in responding to specific environmental signals that control the activity of their cognate sigma factor.


  • Organizational Affiliation: 
    • The Rockefeller University, 1230 York Avenue, New York, NY 10021, USA.

Macromolecule Content 

  • Total Structure Weight: 83.69 kDa 
  • Atom Count: 5,189 
  • Modeled Residue Count: 706 
  • Deposited Residue Count: 758 
  • Unique protein chains: 2

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
RpoE, ECF SigE
A, C
184Cereibacter sphaeroides 2.4.1Mutation(s): 0 
Gene Names: rpoE
UniProt
Find proteins for Q3IYV6 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.))
Explore Q3IYV6 
Go to UniProtKB:  Q3IYV6
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3IYV6
Sequence Annotations
Expand
Reference Sequence
Find similar proteins by:|  3D Structure
Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Anti-Sigma factor ChrR, transcriptional activator ChrR
B, D
195Cereibacter sphaeroides 2.4.1Mutation(s): 0 
Gene Names: chrR
UniProt
Find proteins for P40685 (Cereibacter sphaeroides (strain ATCC 17023 / DSM 158 / JCM 6121 / CCUG 31486 / LMG 2827 / NBRC 12203 / NCIMB 8253 / ATH 2.4.1.))
Explore P40685 
Go to UniProtKB:  P40685
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40685
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.40 Å
  • R-Value Free:  0.329 (Depositor), 0.346 (DCC) 
  • R-Value Work:  0.284 (Depositor), 0.317 (DCC) 
  • R-Value Observed: 0.286 (Depositor) 
Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 43.601α = 90
b = 119.64β = 90
c = 280.659γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data collection
DENZOdata reduction
SCALEPACKdata scaling
SHARPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-09-18
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Advisory, Derived calculations, Refinement description, Source and taxonomy, Version format compliance
  • Version 1.2: 2024-02-21
    Changes: Data collection, Database references, Derived calculations, Refinement description