2PWQ | pdb_00002pwq

Crystal structure of a putative ubiquitin conjugating enzyme from Plasmodium yoelii

• PDB DOI: https://doi.org/10.2210/pdb2PWQ/pdb

• Classification: LIGASE
• Organism(s): Plasmodium yoelii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-05-11 Released: 2007-05-22 
• Deposition Author(s): Qiu, W., Dong, A., Hassanali, A., Lin, L., Brokx, S., Altamentova, S., Hills, T., Lew, J., Ravichandran, M., Kozieradzki, I., Zhao, Y., Schapira, M., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.308 (Depositor), 0.303 (DCC) 
• R-Value Work: 
  0.267 (Depositor), 0.264 (DCC) 
• R-Value Observed: 
  0.269 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of a putative ubiquitin conjugating enzyme from Plasmodium yoelii.

Qiu, W., Dong, A., Hassanali, A., Lin, L., Brokx, S., Altamentova, S., Hills, T., Lew, J., Ravichandran, M., Kozieradzki, I., Zhao, Y., Schapira, M., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 24.49 kDa 
• Atom Count: 1,314 
• Modeled Residue Count: 154 
• Deposited Residue Count: 216 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin conjugating enzyme	A	216	Plasmodium yoelii	Mutation(s): 0  Gene Names: PY01609
UniProt
Find proteins for Q7RP52 (Plasmodium yoelii yoelii) Explore Q7RP52  Go to UniProtKB:  Q7RP52

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.308 (Depositor), 0.303 (DCC) 
• R-Value Work:  0.267 (Depositor), 0.264 (DCC) 
• R-Value Observed: 0.269 (Depositor) 

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.556	α = 90
b = 48.556	β = 90
c = 179.502	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data collection
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-22 
Deposition Author(s): Qiu, W., Dong, A., Hassanali, A., Lin, L., Brokx, S., Altamentova, S., Hills, T., Lew, J., Ravichandran, M., Kozieradzki, I., Zhao, Y., Schapira, M., Edwards, A.M., Arrowsmith, C.H., Weigelt, J., Sundstrom, M., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-05-22
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2023-08-30
  Changes: Data collection, Database references, Refinement description