2POD

Crystal structure of a member of enolase superfamily from Burkholderia pseudomallei K96243

• PDB DOI: https://doi.org/10.2210/pdb2POD/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Burkholderia pseudomallei K96243
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2007-04-26 Released: 2007-06-05 
• Deposition Author(s): Patskovsky, Y., Bonanno, J., Sauder, J.M., Gilmore, J.M., Iizuka, M., Ozyurt, S., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.34 Å
• R-Value Free: 0.275 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 

Literature

Crystal Structure of a Member of Enolase Superfamily from Burkholderia Pseudomallei.

Patskovsky, Y., Bonanno, J., Sauder, J.M., Gilmore, J.M., Iizuka, M., Gheyi, M., Ozyurt, S., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Dihedral - D4  (Explore in 3D)
Global Stoichiometry: Homo 8-mer - A8 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content

• Total Structure Weight: 92.45 kDa 
• Atom Count: 6,132 
• Modelled Residue Count: 759 
• Deposited Residue Count: 820 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mandelate racemase / muconate lactonizing enzyme	A, B	410	Burkholderia pseudomallei K96243	Mutation(s): 8  Gene Names: BPSS2072
UniProt
Find proteins for Q63IJ7 (Burkholderia pseudomallei (strain K96243)) Explore Q63IJ7  Go to UniProtKB:  Q63IJ7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NA	C [auth A], D [auth B]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.34 Å
• R-Value Free: 0.275 
• R-Value Work: 0.209 
• R-Value Observed: 0.211 
• Space Group: I 4

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 146.771	α = 90
b = 146.771	β = 90
c = 85.531	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
MAR345dtb	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-06-05 
Deposition Author(s): Patskovsky, Y., Bonanno, J., Sauder, J.M., Gilmore, J.M., Iizuka, M., Ozyurt, S., Wasserman, S.R., Smith, D., Gerlt, J., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-06-05
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-03
  Changes: Database references, Derived calculations, Structure summary