2PLO | pdb_00002plo

D-(GTATACC) low temperature (100K)

PDB DOI: https://doi.org/10.2210/pdb2PLO/pdb
NAKB: 2PLO

Classification: DNA
Mutation(s): No

Deposited: 2007-04-20 Released: 2008-05-27
Deposition Author(s): Prange, T., Lecouvey, M., Migianu-Griffoni, E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Work:
0.170 (Depositor)
R-Value Observed:
0.177 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 2PLO

This is version 1.2 of the entry. See complete history.

Literature

Adaptation of macromolecular crystals to extreme conditions: high pressure versus low temperature

Prange, T., Girard, E., Kahn, R., Lecouvey, M., Migianu-Griffoni, E., Mezouar, M., Fourme, R.

To be published.

Macromolecule Content

Total Structure Weight: 4.88 kDa
Atom Count: 393
Modeled Residue Count: 16
Deposited Residue Count: 16
Unique nucleic acid chains: 1

Macromolecules

Find similar nucleic acids by: Sequence

Molecule	Chains	Length	Organism	Image
Entity ID: 1
5'-D(DGPDGPDTPDAPDTPDAPDCPDC)-3'	A, B	8	N/A
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain C [auth A] MOL2 format, chain C [auth A] mmCIF format, chain C [auth A]	C [auth A]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Interactions & Density Focus chain C [auth A]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.40 Å
R-Value Work: 0.170 (Depositor)
R-Value Observed: 0.177 (Depositor)

Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.783	α = 90
b = 44.783	β = 90
c = 41.393	γ = 120

Software Package:

Software Name	Purpose
SHELXL-97	refinement
ADSC	data collection
HKL-2000	data reduction
SCALEPACK	data scaling

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2008-05-27

Deposition Author(s):

Migianu-Griffoni, E.

Revision History (Full details and data files)

Version 1.0: 2008-05-27
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2023-08-30
Changes: Data collection, Database references, Derived calculations, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.