2PH7 | pdb_00002ph7

Crystal structure of AF2093 from Archaeoglobus fulgidus

• PDB DOI: https://doi.org/10.2210/pdb2PH7/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Archaeoglobus fulgidus DSM 4304
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2007-04-10 Released: 2007-05-08 
• Deposition Author(s): Chang, J.C., Yang, H., Hwang, J., Zhu, J., Chen, L., Fu, Z.-Q., Xu, H., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.271 (Depositor), 0.227 (DCC) 
• R-Value Work: 
  0.230 (Depositor), 0.222 (DCC) 
• R-Value Observed: 
  0.232 (Depositor) 

Literature

Crystal structure of AF2093 from Archaeoglobus fulgidus.

Chang, J.C., Yang, H., Hwang, J., Zhu, J., Chen, L., Fu, Z.-Q., Xu, H., Rose, J.P., Wang, B.-C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 57.94 kDa 
• Atom Count: 3,655 
• Modeled Residue Count: 439 
• Deposited Residue Count: 492 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein AF_2093	A, B	246	Archaeoglobus fulgidus DSM 4304	Mutation(s): 6  Gene Names: AF_2093
UniProt
Find proteins for O28187 (Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)) Explore O28187  Go to UniProtKB:  O28187

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.271 (Depositor), 0.227 (DCC) 
• R-Value Work:  0.230 (Depositor), 0.222 (DCC) 
• R-Value Observed: 0.232 (Depositor) 

Space Group: F 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 206.536	α = 90
b = 206.536	β = 90
c = 206.536	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SERGUI	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SGXPRO	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-05-08 
Deposition Author(s): Chang, J.C., Yang, H., Hwang, J., Zhu, J., Chen, L., Fu, Z.-Q., Xu, H., Rose, J.P., Wang, B.-C., Southeast Collaboratory for Structural Genomics (SECSG)

Revision History  

• Version 1.0: 2007-05-08
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-01-24
  Changes: Database references, Structure summary
• Version 1.4: 2024-11-13
  Changes: Data collection, Database references, Derived calculations, Structure summary