2OTA | pdb_00002ota

Crystal structure of the UPF0352 protein CPS_2611 from Colwellia psychrerythraea. NESG target CsR4.

PDB DOI: https://doi.org/10.2210/pdb2OTA/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Colwellia psychrerythraea 34H
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-02-07 Released: 2007-02-20
Deposition Author(s): Vorobiev, S.M., Zhou, W., Su, M., Seetharaman, J., Wang, H., Janjua, H., Cunningham, K., Ma, L.-C., Xiao, R., Liu, C., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free:
0.261 (Depositor), 0.274 (DCC)
R-Value Work:
0.235 (Depositor), 0.249 (DCC)
R-Value Observed:
0.235 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.5 of the entry. See complete history.

Literature

Crystal structure of the UPF0352 protein CPS_2611 from Colwellia psychrerythraea. NESG target CsR4.

Vorobiev, S.M., Zhou, W., Su, M., Seetharaman, J., Wang, H., Janjua, H., Cunningham, K., Ma, L.-C., Liu, C., Acton, T.B., Xiao, R., Montelione, G.T., Tong, L., Hunt, J.F.

To be published.

Macromolecule Content

Total Structure Weight: 17.4 kDa
Atom Count: 1,052
Modeled Residue Count: 128
Deposited Residue Count: 152
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
UPF0352 protein CPS_2611	A, B	76	Colwellia psychrerythraea 34H	Mutation(s): 2 Gene Names: CPS_2611
UniProt
Find proteins for Q481E4 (Colwellia psychrerythraea (strain 34H / ATCC BAA-681)) Explore Q481E4 Go to UniProtKB: Q481E4
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q481E4
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.20 Å
R-Value Free: 0.261 (Depositor), 0.274 (DCC)
R-Value Work: 0.235 (Depositor), 0.249 (DCC)
R-Value Observed: 0.235 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.739	α = 90
b = 58.47	β = 90
c = 59.65	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data collection
DENZO	data reduction
SCALEPACK	data scaling
SnB	phasing
RESOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2007-02-20

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2007-02-20
Type: Initial release
Version 1.1: 2007-10-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Source and taxonomy, Version format compliance
Version 1.3: 2017-10-18
Changes: Refinement description
Version 1.4: 2018-01-24
Changes: Database references, Structure summary
Version 1.5: 2024-10-16
Changes: Data collection, Database references, Derived calculations, Structure summary