2OK3

X-ray structure of human cyclophilin J at 2.0 angstrom


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.202 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Targeting Cyclophilin J, a novel peptidyl-prolyl isomerase, can induce cellular G1/S arrest and repress the growth of Hepatocellular carcinoma

Chen, J.Chen, S.Huang, L.Zhao, X.Tan, J.Huang, C.Saiyin, H.Zhang, M.Zeng, X.Xi, J.Wan, B.Zhao, Y.Xia, Z.Jiang, H.Yi, Q.Liu, J.O.Yu, L.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Peptidyl-prolyl cis-trans isomerase-like 3161Homo sapiensMutation(s): 0 
Gene Names: PPIL3b
EC: 5.2.1.8
UniProt & NIH Common Fund Data Resources
Find proteins for Q9H2H8 (Homo sapiens)
Explore Q9H2H8 
Go to UniProtKB:  Q9H2H8
PHAROS:  Q9H2H8
GTEx:  ENSG00000240344 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9H2H8
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.255 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.202 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.577α = 90
b = 40.577β = 90
c = 170.682γ = 120
Software Package:
Software NamePurpose
CNSrefinement
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
CNSphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

  • Released Date: 2008-01-22 
  • Deposition Author(s): Xia, Z.

Revision History  (Full details and data files)

  • Version 1.0: 2008-01-22
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-10-25
    Changes: Data collection, Database references, Derived calculations, Refinement description