2OHW | pdb_00002ohw

Crystal structure of the YueI protein from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb2OHW/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2007-01-10 Released: 2007-01-23 
• Deposition Author(s): Bonanno, J.B., Jin, X., Mu, H., Dickey, M., Bain, K.T., Wu, B., Chen, T., Reyes, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free: 
  0.233 (Depositor), 0.229 (DCC) 
• R-Value Work: 
  0.202 (Depositor) 
• R-Value Observed: 
  0.204 (Depositor) 

Literature

Crystal structure of the YueI protein from Bacillus subtilis

Bonanno, J.B., Jin, X., Mu, H., Dickey, M., Bain, K.T., Wu, B., Chen, T., Reyes, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 30.56 kDa 
• Atom Count: 2,207 
• Modeled Residue Count: 256 
• Deposited Residue Count: 266 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YueI protein	A, B	133	Bacillus subtilis	Mutation(s): 0  Gene Names: yueI
UniProt
Find proteins for O32092 (Bacillus subtilis (strain 168)) Explore O32092  Go to UniProtKB:  O32092

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.40 Å
• R-Value Free:  0.233 (Depositor), 0.229 (DCC) 
• R-Value Work:  0.202 (Depositor) 
• R-Value Observed: 0.204 (Depositor) 

Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 34.895	α = 89.88
b = 39.443	β = 108.05
c = 48.778	γ = 110.26

Software Package:

Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
CCP4	data scaling
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-23 
Deposition Author(s): Bonanno, J.B., Jin, X., Mu, H., Dickey, M., Bain, K.T., Wu, B., Chen, T., Reyes, C., Wasserman, S., Smith, D., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2007-01-23
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2012-10-24
  Changes: Structure summary
• Version 1.4: 2017-10-18
  Changes: Refinement description
• Version 1.5: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.6: 2021-02-03
  Changes: Database references, Structure summary
• Version 1.7: 2023-12-27
  Changes: Data collection, Database references