2ND4 | pdb_00002nd4

A distinct sortase SrtB anchors and processes a streptococcal adhesin AbpA with a novel structural property


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 10 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 2ND4

This is version 1.1 of the entry. See complete history

Literature

A distinct sortase SrtB anchors and processes a streptococcal adhesin AbpA with a novel structural property.

Liang, X.Liu, B.Zhu, F.Scannapieco, F.A.Haase, E.M.Matthews, S.Wu, H.

(2016) Sci Rep 6: 30966-30966

  • DOI: https://doi.org/10.1038/srep30966
  • Primary Citation Related Structures: 
    2ND4

  • PubMed Abstract: 

    Surface display of proteins by sortases in Gram-positive bacteria is crucial for bacterial fitness and virulence. We found a unique gene locus encoding an amylase-binding adhesin AbpA and a sortase B in oral streptococci. AbpA possesses a new distinct C-terminal cell wall sorting signal. We demonstrated that this C-terminal motif is required for anchoring AbpA to cell wall. In vitro and in vivo studies revealed that SrtB has dual functions, anchoring AbpA to the cell wall and processing AbpA into a ladder profile. Solution structure of AbpA determined by NMR reveals a novel structure comprising a small globular α/β domain and an extended coiled-coil heliacal domain. Structural and biochemical studies identified key residues that are crucial for amylase binding. Taken together, our studies document a unique sortase/adhesion substrate system in streptococci adapted to the oral environment rich in salivary amylase.


  • Organizational Affiliation
    • Departments of Pediatric Dentistry and Microbiology, University of Alabama at Birmingham School of Dentistry, Birmingham, AL, USA.

Macromolecule Content 

  • Total Structure Weight: 19.12 kDa 
  • Atom Count: 1,346 
  • Modeled Residue Count: 173 
  • Deposited Residue Count: 173 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Amylase-binding protein AbpA173Streptococcus parasanguinis FW213Mutation(s): 0 
Gene Names: abpASpaf_0022UA01_01996
UniProt
Find proteins for I1ZJ30 (Streptococcus parasanguinis FW213)
Explore I1ZJ30 
Go to UniProtKB:  I1ZJ30
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupI1ZJ30
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 10 
  • Conformers Submitted: 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-07
    Type: Initial release
  • Version 1.1: 2024-05-01
    Changes: Data collection, Database references